| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,252,313 – 4,252,411 |
| Length | 98 |
| Max. P | 0.772447 |
| Location | 4,252,313 – 4,252,411 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -21.84 |
| Consensus MFE | -9.42 |
| Energy contribution | -11.61 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4252313 98 + 27905053 ACACGCUAACACACACACUCACACAAAGCUAACAAUAAACUACAAAUGGCUUCCAUGCACAUAAAAGGCAUCCCUCGAAUGUGUGCUAGUAUGUGUGU ........(((((((.(((((((((((((((...............))))))..((((.(......)))))........))))))..))).))))))) ( -23.56) >DroSec_CAF1 54193 88 + 1 ACACAC--ACACA--------CACAAAGCUAACAAUAAACUACAAAUGGCUUCCAUGCACAUAAAAGGCAUCCCUCGAAUGUGUGCGAGUAUGUGUGU ....((--(((((--------.((.((((((...............))))))...((((((((..(((....)))....)))))))).)).))))))) ( -23.56) >DroEre_CAF1 57119 91 + 1 ACACGC-------CACACACACACACAGCUAACAAUAAACUACAAAUGGCUUCCAUGCGCAUAAAAGGCAUCCCUCGAAUGUGUGCGAGUAUGUGUGU ......-------...(((((((.(((((((...............)))))....((((((((..(((....)))....)))))))).)).))))))) ( -22.26) >DroAna_CAF1 56727 80 + 1 ACACGC----------ACACGCACACAUUUAACAAUAAACUACAAAUGGCUGCCCGGCACAUAAAAGGCAUCCC---AGCAUGUAGGAGUGUG----- ((((((----------....)).................(((((..(((.((((............))))..))---)...)))))..)))).----- ( -18.00) >consensus ACACGC__________ACACACACAAAGCUAACAAUAAACUACAAAUGGCUUCCAUGCACAUAAAAGGCAUCCCUCGAAUGUGUGCGAGUAUGUGUGU ...................((((((((((((...............))))))....(((((((..(((....)))....))))))).....)))))). ( -9.42 = -11.61 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:26 2006