Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,246,150 – 4,246,241 |
Length | 91 |
Max. P | 0.677727 |
Location | 4,246,150 – 4,246,241 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -12.73 |
Energy contribution | -13.12 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.18 |
Mean z-score | -2.49 |
Structure conservation index | 0.50 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4246150 91 - 27905053 GGUUUAGCUACUGCUCAGGUAUUUUUACCUGUUCAACUGCGAAAUUAAUUGCAAAUUGGAAAGAAAAAGAGCCGCAGUAUGUAAAAAACAA---- .((((.((((((((.((((((....))))))(((((.(((((......)))))..))))).............)))))).))...))))..---- ( -23.20) >DroPse_CAF1 53870 95 - 1 CUUUUAGCUGCUGGUCUGCUUCUCUUCGCUGAUGAGUGGGGAGAUCAACUGCAAGGCGGACAGAAAAAAGGCAGCUGUAAGUGCGGAUCUACCGU (((.((((((((.(((((((((((((((((....))))))))))..........)))))))........)))))))).))).((((.....)))) ( -37.40) >DroSec_CAF1 48025 91 - 1 GGUUUAGCUACUGCUCAGGUACUUUUACCUGUUCAACUGCGAAAUUAAAUGCAAAUUGGAGAGAAAAAGAGCCGCAGUAUGUAAAAAACAA---- .((((.((((((((...(((.(((((..((.(((((.((((........))))..))))).)).))))).))))))))).))...))))..---- ( -22.40) >DroSim_CAF1 47765 90 - 1 GGUUUAGCUACUGCUCAGGUACUUUUACCUGUUCAACUGCGAAAUUAACUGCAAAUUGGAGAGAAAAAGAGCCGCAGUAUGUAAAAAA-AA---- ..(((.((((((((...(((.(((((..((.(((((.((((........))))..))))).)).))))).))))))))).)).)))..-..---- ( -22.10) >DroEre_CAF1 50930 91 - 1 GGUUUAGCUGCUGCUCAGGUGCUUUUGCCUGAUCAACUGCGAAAUUAAUUGCAAAUUGGAGAGGAAAAGAGCCGCAGUAUGUAAAUAACGA---- .(((((..((((((...(((.(((((.(((..((((.(((((......)))))..))))..)))))))).)))))))))..))))).....---- ( -25.80) >DroYak_CAF1 49269 91 - 1 GGUUUAGCUACUGCUCAGGUAUUUUAACCUGAUCAACUGCGAAAUAAACUGCAAAUUGGAAAGGAAAAGGGCCGCAGUAUGUAAAUAAUAA---- .(((((..((((((((((((......))))))((((.((((........))))..))))...((.......))))))))..))))).....---- ( -21.40) >consensus GGUUUAGCUACUGCUCAGGUACUUUUACCUGAUCAACUGCGAAAUUAACUGCAAAUUGGAGAGAAAAAGAGCCGCAGUAUGUAAAAAACAA____ ......((((((((.(((((......)))))......((((........))))....................)))))).))............. (-12.73 = -13.12 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:25 2006