Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,244,148 – 4,244,247 |
Length | 99 |
Max. P | 0.933700 |
Location | 4,244,148 – 4,244,247 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 94.80 |
Mean single sequence MFE | -23.72 |
Consensus MFE | -19.60 |
Energy contribution | -20.60 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.67 |
Structure conservation index | 0.83 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4244148 99 + 27905053 AAUUAUUGGCCACAAAAACCUCAAAUUCAAAAGCUCCGA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG .....(((....)))................((((((..---((.(((....))).))....((((((((((......)).))))))))....))))))... ( -25.60) >DroSec_CAF1 46020 99 + 1 AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCGA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG ...............................((((((..---((.(((....))).))....((((((((((......)).))))))))....))))))... ( -25.20) >DroSim_CAF1 45746 99 + 1 AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCUA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG ...............................(((((((.---((.(((....))).))....((((((((((......)).))))))))...)))))))... ( -25.90) >DroEre_CAF1 48944 99 + 1 AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCUA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG ...............................(((((((.---((.(((....))).))....((((((((((......)).))))))))...)))))))... ( -25.90) >DroYak_CAF1 47270 99 + 1 AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCGA---CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG ...............................((((((..---((.(((....))).))....((((((((((......)).))))))))....))))))... ( -25.20) >DroAna_CAF1 48286 102 + 1 AAUUAUUUGCCACAAAAACCUCAAACUCACGAGCUCCGACCACUCAAGUGCACCCAAGGACAUGCAGCUAACAAAGCAGUCCAGAUGUAAUAGGAAUCUAUG ..............................((..(((...(((....))).......((((.(((..........)))))))..........))).)).... ( -14.50) >consensus AAUUAUUUGCCACAAAAACCUCAAACUCAAAAGCUCCGA___CUCGAGUGCACUCAAGGACAUGCAGCUAACAAAGCAGUCUAGCUGUAAUAAGGAGCUAUG ...............................((((((.....((.(((....))).))....((((((((((......)).))))))))....))))))... (-19.60 = -20.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:24 2006