Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,238,982 – 4,239,105 |
Length | 123 |
Max. P | 0.943482 |
Location | 4,238,982 – 4,239,076 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 79.60 |
Mean single sequence MFE | -26.13 |
Consensus MFE | -19.20 |
Energy contribution | -20.09 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.05 |
Mean z-score | -1.76 |
Structure conservation index | 0.73 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.878802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4238982 94 + 27905053 -AUAUGU--AUGUAUGUACCUAUAAAAUGGGUGCAUGGAAACAUUCGCUCACGCAAUGAUUUAUUACGCGUGAUUGGCGUGAUUGCCACUUUGCUGC -..((((--.(.(((((((((((...))))))))))).).))))..((((((((.............)))))).(((((....)))))....))... ( -29.92) >DroSec_CAF1 40910 90 + 1 -AUAUGUGUAUAUAU------AUAAAAUGGGUGCAUGGAAACAUUCGCUCACGCAAUGAUUUAUUACGCGUGAUUGGCGUGAUUGCCACUUUGCUGC -.((((((....)))------)))...((((((.(((....))).)))))).((((......(((((((.......))))))).......))))... ( -24.62) >DroSim_CAF1 41984 96 + 1 -AUAUGUGUAUGUAUGUACCUAUAAAAUGGGUGCAUGGAAACAUUCGCUCACGCAAUGAUUUAUUACGCGUGAUUGGCGUGAUUGCCACUUUGCUGC -....((((.(.(((((((((((...))))))))))).).))))..((((((((.............)))))).(((((....)))))....))... ( -30.22) >DroYak_CAF1 42074 95 + 1 UAUAUAC--UUGUAUAUCCCUAUAAAAUGGGCGCAUGGAAACAUUCGCUCACGCAAUGAUUUAUUACGCGUGAUUGGCGUGAUUGCCACUUUGCUGC .(((((.--...)))))..........((((((.(((....))).)))))).((((......(((((((.......))))))).......))))... ( -25.92) >DroAna_CAF1 43283 94 + 1 -GUUGGGGUGCGUGUGUAGGUUU--UGGGGGUGCUGGGCAACAUUCGCUCACGCAAUGAUUUAUUACGCGUGAUUGGCGUGAUUGCCACUUUGCUGC -((..((..((((((((((((((--((((((((...(....)...))))).).))).)))))).)))))))...(((((....)))))))..))... ( -27.80) >DroPer_CAF1 46388 76 + 1 CC-------------CUCCCU--------CGCACAUGCGGACAUUCACUCACGCAAUGAUUUAUUACGCGUGAUUGGCGUGAUUGCCACUUUGCUGC ..-------------......--------.(((...(.((.((.((((((((((.............)))))).....)))).)))).)..)))... ( -18.32) >consensus _AUAUGU__AUGUAUGUACCUAUAAAAUGGGUGCAUGGAAACAUUCGCUCACGCAAUGAUUUAUUACGCGUGAUUGGCGUGAUUGCCACUUUGCUGC ............................(((((.(((....))).)))))..((((......(((((((.......))))))).......))))... (-19.20 = -20.09 + 0.89)
Location | 4,238,982 – 4,239,076 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 79.60 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -16.99 |
Energy contribution | -17.05 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.78 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891893 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4238982 94 - 27905053 GCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUUCCAUGCACCCAUUUUAUAGGUACAUACAU--ACAUAU- ...((....((((......)))).(((((((...........)))))))))..((((....(((.(((.........))).)))....--))))..- ( -22.10) >DroSec_CAF1 40910 90 - 1 GCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUUCCAUGCACCCAUUUUAU------AUAUAUACACAUAU- (((((....((((......)))).(((((((...........)))))))))((.....))..)))...........------..............- ( -18.40) >DroSim_CAF1 41984 96 - 1 GCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUUCCAUGCACCCAUUUUAUAGGUACAUACAUACACAUAU- ...((....((((......)))).(((((((...........)))))))))(.((((....(((.(((.........))).))))))).)......- ( -20.90) >DroYak_CAF1 42074 95 - 1 GCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUUCCAUGCGCCCAUUUUAUAGGGAUAUACAA--GUAUAUA (((((....((((......)))).(((((((...........)))))))))((.....))..))).(((........)))(((((...--.))))). ( -23.50) >DroAna_CAF1 43283 94 - 1 GCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUGCCCAGCACCCCCA--AAACCUACACACGCACCCCAAC- ((((((...((((......)))).(((((((...........))))))).....))))))............--......................- ( -21.90) >DroPer_CAF1 46388 76 - 1 GCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGUGAAUGUCCGCAUGUGCG--------AGGGAG-------------GG ...(((..((((((.((((.....(((((((...........))))))))))).)).))))...))).--------......-------------.. ( -23.30) >consensus GCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUUCCAUGCACCCAUUUUAUAGGUACAUACAU__ACAUAU_ ((.((....((((......)))).(((((((...........)))))))))..(((....)))))................................ (-16.99 = -17.05 + 0.06)
Location | 4,239,000 – 4,239,105 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 75.35 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -18.99 |
Energy contribution | -19.10 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.30 |
Mean z-score | -1.65 |
Structure conservation index | 0.69 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4239000 105 - 27905053 GCGACACCGUCG-----GGGCAGCCUGAAAUAAAGCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUUCCAUG----CACCCAUUUUAU ..(((...)))(-----(((((....((((((..((.......((((......)))).(((((((...........)))))))))...))))))..))----).)))....... ( -31.70) >DroPse_CAF1 46018 96 - 1 -GGACACGGAGA-----GGGGAAGCUAAAAUAAGGCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGUGAAUGUCCGCAUG----UGCG-------- -(((((......-----......(((.......))).((....((((......)))).(((((((...........)))))))))...)))))((...----.)).-------- ( -25.70) >DroGri_CAF1 53140 100 - 1 GGUACAACAGCG-------GGAAGAUGAAAUAAAGCAACAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGUCCAUGCACACAUAUAUUU-------UUAC .........(((-------(((.....................((((......)))).(((((((...........))))))).))).)))............-------.... ( -21.00) >DroMoj_CAF1 53903 96 - 1 GUUACAGCAACG-------GGAAGAUGAAAUAAAGCAUCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGUGUAUGCGUGCAUA----C-------UUAU ......(((.((-------.(..((((........))))....((((......)))).(((((((...........))))))).....).)))))...----.-------.... ( -22.40) >DroAna_CAF1 43303 108 - 1 GCGACACCGCCGCCGGGGAGGAAGUUGAAAUAAAGCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGCGAAUGUUGCCCAG----CACCCCCA--AA (((....)))....((((..(..((((........))))...(.((((((..(((...(((((((...........))))))))))...)))))))..----)..)))).--.. ( -34.90) >DroPer_CAF1 46396 96 - 1 -GGACACGGAGA-----GGGGAAGCUGAAAUAAGGCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGUGAAUGUCCGCAUG----UGCG-------- -(((((....((-----..((..((((........))))...(((.....))).))..)).((((((((.....))))))))......)))))((...----.)).-------- ( -28.60) >consensus GGGACACCGACG_____GGGGAAGCUGAAAUAAAGCAGCAAAGUGGCAAUCACGCCAAUCACGCGUAAUAAAUCAUUGCGUGAGUGAAUGUCCGCAUG____C_C_______A_ .(((((.................((((........))))....((((......)))).(((((((...........))))))).....)))))..................... (-18.99 = -19.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:23 2006