Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,221,846 – 4,221,948 |
Length | 102 |
Max. P | 0.633904 |
Location | 4,221,846 – 4,221,948 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 79.53 |
Mean single sequence MFE | -17.41 |
Consensus MFE | -11.62 |
Energy contribution | -11.51 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -1.37 |
Structure conservation index | 0.67 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4221846 102 - 27905053 AAU--GUGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCAAC--CUACCUACUCUGCCUUCCAU- ...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....))))...))))....--....................- ( -17.11) >DroSec_CAF1 33009 82 - 1 AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCCA----------------------C- ...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....))))...))))...----------------------.- ( -19.01) >DroSim_CAF1 33963 102 - 1 AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCCAUAGCCACCCA--CAGCCACCCAC- ...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....))))...)))).............--...........- ( -19.01) >DroEre_CAF1 35845 90 - 1 AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAAC------------CCA--CCGCCGCCCAC- ...--(((((((((.......(((((((....(((.....)))....)))))))))))).((((.....)))).....------------...--..).)))....- ( -15.31) >DroYak_CAF1 33680 90 - 1 AAU--GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAAC------------CCA--CCUCCGCCCAC- ...--(((.(((((.......(((((((....(((.....)))....)))))))))))).((((.....)))).....------------...--....)))....- ( -14.41) >DroAna_CAF1 35518 96 - 1 AGCGAGCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUACUUUGAGCGGAGCAGCCCCU-----------AGGCCACCCACC .(((((..((((((.......(((((((....(((.....)))....))))))))))))..)..)))...))((.(..(((...-----------.)))..)))... ( -19.61) >consensus AAU__GCGCGCGUGUUUAUCAGAAAUUAAAUGUCAAUUGUUGAAAACUAAUUUCCACGCAUGUUCUCCAAACACAAGCGCCCA_______CCA__CCGCCACCCAC_ .........(((((.......(((((((....(((.....)))....)))))))))))).((((.....)))).................................. (-11.62 = -11.51 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:20 2006