Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,218,522 – 4,218,612 |
Length | 90 |
Max. P | 0.604029 |
Location | 4,218,522 – 4,218,612 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -18.62 |
Consensus MFE | -13.48 |
Energy contribution | -14.15 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.18 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4218522 90 - 27905053 UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUUCUUAACUUCCGCUAC--CCUCGCAAUU-----CCAUG-AACUUGAACU .........(((((((((..((.(((((......))))).))))))))............((...--....))....-----....)-))........ ( -19.50) >DroSec_CAF1 29778 90 - 1 UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUCCUUAACUUCCGCUAC--CCUCGCUACU-----CCAUG-AACUUAAACU .........(((((((((..((.(((((......))))).))))))))............((...--....))....-----....)-))........ ( -19.00) >DroSim_CAF1 30690 90 - 1 UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUCCAUAACUUCCGCUAC--CCUCGCUACU-----CCAUG-AACUUGAACU .........(((((((((..((.(((((......))))).))))))))............((...--....))....-----....)-))........ ( -19.00) >DroEre_CAF1 32421 91 - 1 UGAAACUCUUUCGGGAUGAACAUCCGCCGCCAGAUGCGGCUGCAUCCCUCUCUUGCU-CCGCUACGCCCCCGCUACU-----CCAUG-AACUUGAACU .........(((((((((.......(((((.....)))))..)))))).........-.......((....))....-----....)-))........ ( -18.40) >DroYak_CAF1 30212 93 - 1 UGAAACUCUUUCGGGAUGUACAUCCGCCACCAGAUGCGGCUGCAUCCCCCUCAUGCUUCCGCCACCUCCCCUCUGCU-----CCAUCCAACUUGAACU .........(((((((((((...((((........)))).))))))))......((....))...............-----...........))).. ( -18.30) >DroAna_CAF1 32109 89 - 1 AGAAAGUCUUUUUGGAUGUGCAUCCGCCGGCAGCUGCAACUGCAUCACGGCUC-ACU-CC----U--CCUCGCUAUCACGAACUUUG-AACUUGAACU .((.(((......(((.(((...(((...((((......))))....)))..)-)))-))----.--....))).))..........-.......... ( -17.50) >consensus UGAAACUCUUUCGGGAUGAACAUCCGCAACCAGAUGCGGCUGCAUCCCUCCUUAACUUCCGCUAC__CCUCGCUACU_____CCAUG_AACUUGAACU ............((((((..((.((((........)))).)))))))).................................................. (-13.48 = -14.15 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:19 2006