Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,217,248 – 4,217,339 |
Length | 91 |
Max. P | 0.909141 |
Location | 4,217,248 – 4,217,339 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.59 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -19.79 |
Energy contribution | -20.10 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.64 |
Structure conservation index | 0.89 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4217248 91 + 27905053 AUGUUAUGCAAUUCAUGUAUUGCACGUGCGAUUGAUUUUAAUUAAAACCAUUGGGCAGCGAUGCGAUGAUGGGUGGGUGGGAUAUGUUUAA ..............(((((((.(((.(((..(((((....)))))..((((((.(((....)))..))))))))).))).))))))).... ( -20.00) >DroSec_CAF1 28475 91 + 1 AUGUUAUGCAAUUCAUGUAUUGCACGUGCGAUUGAUUUUAAUUAAAAUCGUUGGGCAGCGAUGCGAUGAUGGGUGGGGGGAAUAUGUUUAA .(.((((.((..(((((((((((..((.((((.((((((....)))))))))).)).))))))).)))))).)))).)............. ( -21.90) >DroEre_CAF1 31068 88 + 1 AUGUUAUGCAAUUCAUGUAUUGCACGUGCGAUUGAUUUUAAUUAAAAUCGUUGGGCAGCGAUGCAAUGACGGGUGGG-UA--UAUGUUUAA ....(((((.((((...((((((((((((...(((((((....)))))))....))).)).)))))))..))))..)-))--))....... ( -21.60) >DroYak_CAF1 28963 91 + 1 AUGUUAUGCAAUUCAUGUAUUGCACGUGCGAUUGAUUUUAAUUAAAAUCGUUGGGCAGCGAUGCGAUGAUGGGUGGGGUAGCUAUGUUUAA ..(((((.(.((((((.((((((((((((...(((((((....)))))))....))).)).))))))))))))).).)))))......... ( -25.80) >consensus AUGUUAUGCAAUUCAUGUAUUGCACGUGCGAUUGAUUUUAAUUAAAAUCGUUGGGCAGCGAUGCGAUGAUGGGUGGGGGAGAUAUGUUUAA ...((((.((..(((((((((((..((.((((.((((((....)))))))))).)).))))))).)))))).))))............... (-19.79 = -20.10 + 0.31)
Location | 4,217,248 – 4,217,339 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 93.59 |
Mean single sequence MFE | -12.52 |
Consensus MFE | -10.89 |
Energy contribution | -10.70 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.87 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4217248 91 - 27905053 UUAAACAUAUCCCACCCACCCAUCAUCGCAUCGCUGCCCAAUGGUUUUAAUUAAAAUCAAUCGCACGUGCAAUACAUGAAUUGCAUAACAU ................................(.(((....(((((((....)))))))...))))(((((((......)))))))..... ( -11.70) >DroSec_CAF1 28475 91 - 1 UUAAACAUAUUCCCCCCACCCAUCAUCGCAUCGCUGCCCAACGAUUUUAAUUAAAAUCAAUCGCACGUGCAAUACAUGAAUUGCAUAACAU ...........................(((....))).....((((((....))))))........(((((((......)))))))..... ( -11.00) >DroEre_CAF1 31068 88 - 1 UUAAACAUA--UA-CCCACCCGUCAUUGCAUCGCUGCCCAACGAUUUUAAUUAAAAUCAAUCGCACGUGCAAUACAUGAAUUGCAUAACAU .........--..-.......((.((((((.((.(((.....((((((....))))))....)))))))))))))................ ( -14.20) >DroYak_CAF1 28963 91 - 1 UUAAACAUAGCUACCCCACCCAUCAUCGCAUCGCUGCCCAACGAUUUUAAUUAAAAUCAAUCGCACGUGCAAUACAUGAAUUGCAUAACAU .........((................(((....))).....((((((....))))))....))..(((((((......)))))))..... ( -13.20) >consensus UUAAACAUAUCCACCCCACCCAUCAUCGCAUCGCUGCCCAACGAUUUUAAUUAAAAUCAAUCGCACGUGCAAUACAUGAAUUGCAUAACAU ...........................(((....))).....((((((....))))))........(((((((......)))))))..... (-10.89 = -10.70 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:18 2006