Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,212,411 – 4,212,513 |
Length | 102 |
Max. P | 0.760813 |
Location | 4,212,411 – 4,212,513 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 87.65 |
Mean single sequence MFE | -42.13 |
Consensus MFE | -33.80 |
Energy contribution | -34.97 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.12 |
Mean z-score | -2.44 |
Structure conservation index | 0.80 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4212411 102 + 27905053 GUCCACUAAAUACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGUUCCUUACCUUCGACUUGGACGCAAUGGGCAAAGUGCCGAGGU ...........(((..((((((((....)))((((((.(.((((((((((((((............)))))))))))))).).))))))...)))))..))) ( -42.60) >DroPse_CAF1 26971 102 + 1 GGCCACUGAACACGGAGGCAUAGUCCGAGCUGCUCAUCGAGUCCGAAUUGAGGGCCGCCGUGCGUCGCGUGGACUUGGAGGCAAUGGGCAGUGUGCCCAGAU .(((.(..(.((((((.((((....((.(((.(((((((....)))..)))))))))..)))).)).))))...)..).)))..(((((.....)))))... ( -39.50) >DroSim_CAF1 24493 102 + 1 GUCCACUAAAUACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCCGUGUUUCUUACCUUCGACUUGGACGCAAUGGGCAAAGUGCCGAGGU ...........(((..((((((((....)))((((((.(.((((((((((((((............)))))))))))))).).))))))...)))))..))) ( -42.60) >DroEre_CAF1 24327 102 + 1 GUCCACUGAACACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGGUCCUUGCCUUCGACUUGGACGCUAUGGGCAAAGUGCCGAGGU ...........(((..((((((((....)))((((((.(.(((((((((((((((((......))))))))))))))))).).))))))...)))))..))) ( -49.30) >DroYak_CAF1 24063 102 + 1 GUCCACUGAAUACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGUUCCUUACCUUCGCUUUGGACGCUAUGGGCAAAGUGCCGAGGU ...........(((..((((((((....)))((((((.(.(((((((.((((((............)))))).))))))).).))))))...)))))..))) ( -35.90) >DroAna_CAF1 26178 102 + 1 GUCCACUGAACACAGAGGCGUAGUCGGAACUGCUCAUCGAGUCCGAGUUUAAGGCUGAGCUCCUGACCUUCGACUUGGACGCAAUGGGCAGUGUGCCGAGGU (.((.(((....))).)))....((((.(((((((((.(.(((((((((.(((((.........).)))).))))))))).).)))))))))...))))... ( -42.90) >consensus GUCCACUGAACACCGAGGCAUAGUCGGAACUGCUCAUCGAGUCCGAGUUGAGGGCAGUGUUCCUUACCUUCGACUUGGACGCAAUGGGCAAAGUGCCGAGGU ...........(((..((((((((....)))((((((.(.((((((((((((((............)))))))))))))).).))))))...)))))..))) (-33.80 = -34.97 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:13 2006