Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,210,798 – 4,210,889 |
Length | 91 |
Max. P | 0.998488 |
Location | 4,210,798 – 4,210,889 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 94.93 |
Mean single sequence MFE | -42.20 |
Consensus MFE | -39.44 |
Energy contribution | -39.24 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.98 |
Structure conservation index | 0.93 |
SVM decision value | 3.12 |
SVM RNA-class probability | 0.998488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4210798 91 + 27905053 CUUGGACGUCGACCUCGAAUGUUGCUGAUGCGGCAGCAGCAGUGGCACGGUUGUUGCUGCCGCAACGCUGGACGUCGCUGCUGCUGUCGGC ....(((((((....)).))))).......((((((((((((((((.((((.(((((....)))))))))...)))))))))))))))).. ( -46.00) >DroSec_CAF1 22016 91 + 1 CUUGGACGUGGACCUCGAAUGUUGCUGAUGCGGCAGCAGCAGUGGCACGGUUGUUGCUGCCGCAACGCUGGACGUCGCUGCUGCUGUCGGC ....(((((.........))))).......((((((((((((((((.((((.(((((....)))))))))...)))))))))))))))).. ( -43.50) >DroSim_CAF1 22886 91 + 1 CUUGGACGUGGACCUCGAAUGUUGCUGAUGCGGCAGCAGCAGUGGCACGGUUGUUGCUGCCGCAACGCUGGACGUCGCUGCUGCUGUCGGC ....(((((.........))))).......((((((((((((((((.((((.(((((....)))))))))...)))))))))))))))).. ( -43.50) >DroEre_CAF1 22699 89 + 1 CUUGGACGUGGACCUCGAAUGUUGCUGAUGCGGCAGCAGCAGUGGUGCGGUGGUUGCUGCCGCAACGCUGGACGUCGCUGCUGCUGUCG-- ....(((((.........)))))((....))(((((((((((((((.(((((.((((....))))))))).))..))))))))))))).-- ( -41.10) >DroYak_CAF1 22432 89 + 1 CUUGGACGUGGACCUCGGAUGUUGCUGAUGCGGCAGCAGCAGUGGUGCGGUGGUUGUUGCCGCAACGCUGGACGUCGCUGCUGCUGGCG-- ......(((.....((((......))))..((((((((((((((.(((((..(...)..))))).)))).(....))))))))))))))-- ( -36.90) >consensus CUUGGACGUGGACCUCGAAUGUUGCUGAUGCGGCAGCAGCAGUGGCACGGUUGUUGCUGCCGCAACGCUGGACGUCGCUGCUGCUGUCGGC ....(((((.........)))))((....))(((((((((((((((.((((.(((((....)))))))))...)))))))))))))))... (-39.44 = -39.24 + -0.20)
Location | 4,210,798 – 4,210,889 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.93 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -27.80 |
Energy contribution | -28.48 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.04 |
Mean z-score | -1.31 |
Structure conservation index | 0.88 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4210798 91 - 27905053 GCCGACAGCAGCAGCGACGUCCAGCGUUGCGGCAGCAACAACCGUGCCACUGCUGCUGCCGCAUCAGCAACAUUCGAGGUCGACGUCCAAG ((.(.((((((((((((((.....))))))((((.(.......)))))..))))))))).))...........(((....)))........ ( -32.90) >DroSec_CAF1 22016 91 - 1 GCCGACAGCAGCAGCGACGUCCAGCGUUGCGGCAGCAACAACCGUGCCACUGCUGCUGCCGCAUCAGCAACAUUCGAGGUCCACGUCCAAG ((((.((((((((((((((.....))))))((((.(.......)))))..)))))))).)((....)).........)))........... ( -32.70) >DroSim_CAF1 22886 91 - 1 GCCGACAGCAGCAGCGACGUCCAGCGUUGCGGCAGCAACAACCGUGCCACUGCUGCUGCCGCAUCAGCAACAUUCGAGGUCCACGUCCAAG ((((.((((((((((((((.....))))))((((.(.......)))))..)))))))).)((....)).........)))........... ( -32.70) >DroEre_CAF1 22699 89 - 1 --CGACAGCAGCAGCGACGUCCAGCGUUGCGGCAGCAACCACCGCACCACUGCUGCUGCCGCAUCAGCAACAUUCGAGGUCCACGUCCAAG --.(((.((....))(((.((..((..((((((((((......(((....)))))))))))))...)).......)).)))...))).... ( -30.20) >DroYak_CAF1 22432 89 - 1 --CGCCAGCAGCAGCGACGUCCAGCGUUGCGGCAACAACCACCGCACCACUGCUGCUGCCGCAUCAGCAACAUCCGAGGUCCACGUCCAAG --.(((.((((((((((((.....))))((((.........))))......)))))))).((....)).........)))........... ( -29.50) >consensus GCCGACAGCAGCAGCGACGUCCAGCGUUGCGGCAGCAACAACCGUGCCACUGCUGCUGCCGCAUCAGCAACAUUCGAGGUCCACGUCCAAG ..(((((((((((((((((.....))))))(((.((.......)))))..))))))))..((....)).....))).((.......))... (-27.80 = -28.48 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:12 2006