Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 762,360 – 762,466 |
Length | 106 |
Max. P | 0.963325 |
Location | 762,360 – 762,466 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 77.54 |
Mean single sequence MFE | -50.33 |
Consensus MFE | -37.51 |
Energy contribution | -38.07 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.31 |
Mean z-score | -2.01 |
Structure conservation index | 0.75 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 762360 106 - 27905053 GCUUGGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGUACAGUGGGUACUGGCGGUGGUGGGGGCUUCGCCGCCACAG---------CAGAAGC (((..(((((.((((((.((((..((((((.....((((((..((((......))))...))))))...))))))..).))).)))))).)))))..))---------)...... ( -53.80) >DroGri_CAF1 21806 100 - 1 GUUUGGGUGGUGGUGCACCCACAUUGCCAGGCAGAUCGCUGGGCGUCACAAUCGGUGGCACACUAGGCACUGGCGGCGGUGCCGGCUUUGUGGCUGCC---UU------------ ...((((((......)))))).......((((((.((((..((((((((.....)))))......(((((((....))))))).)))..)))))))))---).------------ ( -46.90) >DroSim_CAF1 19355 106 - 1 GCUUGGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGCACAGUGGGUACUGGCGGUGGUGGAGGCUUCGCCGCCACUG---------CAGAAGC ((...(((((.((((((.((((..((((((.....(((((((.((((......)))).).))))))...))))))..).))).)))))).)))))...)---------)...... ( -56.30) >DroEre_CAF1 19290 106 - 1 GUUUAGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGCACAGUGGGCACUGGCGGUGGUGGGGGCUUCGCCGCUACAC---------CGGAUUC .....(((((.((((((.((((..((((((.....(((((((.((((......)))).).))))))...))))))..).))).)))))).)))))....---------....... ( -50.70) >DroYak_CAF1 21334 106 - 1 GUUUGGGUGGGGGAGCCACAGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGUGGCACAGUGGGUACUGGCGGUGGUGGGGGCUUCGCCGCUACAC---------CAGAAAC .(((((((((.((((((.((.(..((((((.....((((((...(((((.....))))).))))))...))))))..).))..)))))).))))....)---------))))... ( -53.40) >DroAna_CAF1 19532 115 - 1 GCUUGGGCGGCGGAGCAACCACUUCCCCGGGUAGGUCGCUGGGCGUUACAAUGGGUGGUAUAGUGGGCACAGGUGGUGGCGGAGGCUUCACCACAGCUUGGGGUGGAGCAGGAGC ((((..((...((.....)).((.((((((((.(.((((((.((..(((.....))))).)))))).)....((((((((....))..)))))).)))))))).)).))..)))) ( -40.90) >consensus GCUUGGGUGGGGGAGCCACUGCGUCGCCAGGUAAAUCGCUGGGCGUCACAAUGGGCGGCACAGUGGGCACUGGCGGUGGUGGGGGCUUCGCCGCUACAC_________CAGAAGC .....(((((.((((((.((((..((((((.....(((((((.((((......)))).).))))))...))))))...)))).)))))).))))).................... (-37.51 = -38.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:23 2006