Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,196,278 – 4,196,369 |
Length | 91 |
Max. P | 0.701335 |
Location | 4,196,278 – 4,196,369 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 83.49 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -24.68 |
Energy contribution | -24.12 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.18 |
Mean z-score | -1.62 |
Structure conservation index | 0.85 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4196278 91 - 27905053 AGUGGGGUCUGAGAUUGGUG-GGGGGGGUUAGGGGGCGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCAUUGUUGUUGUCCUU ...................(-((.((.(.(((..(((((.((((((((.((((.....)))).)))))))).))))).))).).)).))).. ( -28.50) >DroSec_CAF1 7689 74 - 1 AGUGGGGUCUGAGAUUGGUG-GG-----------GACGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCG------UUGUCCUU ................((..-(.-----------(((((.((((((((.((((.....)))).)))))))).))))).------)..))... ( -28.90) >DroSim_CAF1 7897 80 - 1 AGUGGGGUCUGAGAUUGGUG-GG-----------GGCGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCGUUGUCGUUGUCCUU ...((((.(......(((..-(.-----------(((((.((((((((.((((.....)))).)))))))).))))).)..)))..).)))) ( -31.60) >DroEre_CAF1 8337 78 - 1 AGUGGGGUCUGUGAUUGGAGUGG-----------GGCGGAUGUAGCCGAGCUUAGCGGAAGUCUGGCUGCAACUGUCGUUGUCGUUGUC--- .................((..(.-----------(((((.((((((((..(((.....)))..)))))))).))))).)..))......--- ( -24.30) >DroYak_CAF1 7981 79 - 1 AGUGAGUUCUGUGAUUGGG--AG-----------GGCGGAUGCAGCCGAGCUUAGCGGAAGUCUGGCUGCAACUGUCGUUGUCGUUGUCGCU ..........(((((.(.(--(.-----------(((((.((((((((..(((.....)))..))))))))....))))).)).).))))). ( -31.30) >consensus AGUGGGGUCUGAGAUUGGUG_GG___________GGCGGAUGUAGCCGAGCUUAGCGGAAGCCUGGCUGCAACUGUCGUUGUCGUUGUCCUU ..................................(((((.((((((((.((((.....)))).)))))))).)))))............... (-24.68 = -24.12 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:02 2006