Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,196,156 – 4,196,251 |
Length | 95 |
Max. P | 0.996931 |
Location | 4,196,156 – 4,196,251 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 94.61 |
Mean single sequence MFE | -34.68 |
Consensus MFE | -31.98 |
Energy contribution | -31.94 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.82 |
Structure conservation index | 0.92 |
SVM decision value | 2.50 |
SVM RNA-class probability | 0.994724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4196156 95 + 27905053 UUCAUCAAUUGUCCGGCGGAUGUUGAGUUCAGCCGGAGAGGAAUCUGGUUUCCAGUGUUGAAAGGGGGUCCCGCCAACAG--ACGGACCAGAGAUGC ..((((..((.((((((((((.....)))).)))))).))...((((((((....(((((...(((...)))..))))).--..)))))))))))). ( -35.20) >DroSec_CAF1 7567 95 + 1 UUCAUCAAUUGUCCGGCGGAUGUUGAGUUCAGCCGGAGAGGAAUCUGGUUUCCAGUGUUGAAAGGGGGUCCCGCCAACAG--ACGGACCAGAGAUGC ..((((..((.((((((((((.....)))).)))))).))...((((((((....(((((...(((...)))..))))).--..)))))))))))). ( -35.20) >DroSim_CAF1 7775 95 + 1 UUCAUCAAUUGUCCGGCGGAUGUUGAGUUCAGCCGGAGAGGAAUCUGGUUUCCAGUGUUGAAAGGGGGUCCCGCCAACAG--ACGGACCAGAGAUGC ..((((..((.((((((((((.....)))).)))))).))...((((((((....(((((...(((...)))..))))).--..)))))))))))). ( -35.20) >DroEre_CAF1 8216 97 + 1 UUCAUCAAUUGUCCGGCGGAUGUUGAGUUCAGCCGGAGAGAAAUCUGGUUUCCAGAGUUGAAAGGGGGUCCCUCCAACAGAGACGGACCAGGGAUGC ..((((..((.((((((((((.....)))).)))))).))...((((((((.....((((..((((...)))).))))......)))))))))))). ( -32.50) >DroYak_CAF1 7857 97 + 1 UUCAUCAAUUGUCCGGCGGAUGUUGAGUUCAGCCGGAGAGGAAUUUGGUUUCCAGACUUGAAAGGGGGUUCCUCCAGCAGAGAGGGACCAGAGAUGC ..((((...(.((((((((((.....)))).)))))).)((((......))))...(((....)))(((((((((....).))))))))...)))). ( -35.30) >consensus UUCAUCAAUUGUCCGGCGGAUGUUGAGUUCAGCCGGAGAGGAAUCUGGUUUCCAGUGUUGAAAGGGGGUCCCGCCAACAG__ACGGACCAGAGAUGC ..((((..((.((((((((((.....)))).)))))).))...((((((((....(((((...(((...)))..))))).....)))))))))))). (-31.98 = -31.94 + -0.04)
Location | 4,196,156 – 4,196,251 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.61 |
Mean single sequence MFE | -32.76 |
Consensus MFE | -26.68 |
Energy contribution | -28.28 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -3.22 |
Structure conservation index | 0.81 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4196156 95 - 27905053 GCAUCUCUGGUCCGU--CUGUUGGCGGGACCCCCUUUCAACACUGGAAACCAGAUUCCUCUCCGGCUGAACUCAACAUCCGCCGGACAAUUGAUGAA .(((((((((((((.--.((((((.(((....))).)))))).))))..)))))......((((((.((........)).)))))).....)))).. ( -34.00) >DroSec_CAF1 7567 95 - 1 GCAUCUCUGGUCCGU--CUGUUGGCGGGACCCCCUUUCAACACUGGAAACCAGAUUCCUCUCCGGCUGAACUCAACAUCCGCCGGACAAUUGAUGAA .(((((((((((((.--.((((((.(((....))).)))))).))))..)))))......((((((.((........)).)))))).....)))).. ( -34.00) >DroSim_CAF1 7775 95 - 1 GCAUCUCUGGUCCGU--CUGUUGGCGGGACCCCCUUUCAACACUGGAAACCAGAUUCCUCUCCGGCUGAACUCAACAUCCGCCGGACAAUUGAUGAA .(((((((((((((.--.((((((.(((....))).)))))).))))..)))))......((((((.((........)).)))))).....)))).. ( -34.00) >DroEre_CAF1 8216 97 - 1 GCAUCCCUGGUCCGUCUCUGUUGGAGGGACCCCCUUUCAACUCUGGAAACCAGAUUUCUCUCCGGCUGAACUCAACAUCCGCCGGACAAUUGAUGAA .((((.(((((...(((..(((((((((....)))))))))...))).))))).......((((((.((........)).)))))).....)))).. ( -34.90) >DroYak_CAF1 7857 97 - 1 GCAUCUCUGGUCCCUCUCUGCUGGAGGAACCCCCUUUCAAGUCUGGAAACCAAAUUCCUCUCCGGCUGAACUCAACAUCCGCCGGACAAUUGAUGAA .((((...(((.(((((.....))))).))).............((((......))))..((((((.((........)).)))))).....)))).. ( -26.90) >consensus GCAUCUCUGGUCCGU__CUGUUGGCGGGACCCCCUUUCAACACUGGAAACCAGAUUCCUCUCCGGCUGAACUCAACAUCCGCCGGACAAUUGAUGAA .(((((((((((((....((((((.(((....))).)))))).))))..)))))......((((((.((........)).)))))).....)))).. (-26.68 = -28.28 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:01 2006