Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,193,848 – 4,193,942 |
Length | 94 |
Max. P | 0.686709 |
Location | 4,193,848 – 4,193,942 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.17 |
Mean single sequence MFE | -34.43 |
Consensus MFE | -30.54 |
Energy contribution | -30.02 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.19 |
Mean z-score | -1.46 |
Structure conservation index | 0.89 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4193848 94 + 27905053 GCUGCAUGGUGGCCACACUGUAGUGGUCCAAACUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCAGUGUUGCU ((.((((((((((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).))))))).))).)). ( -36.70) >DroPse_CAF1 5863 88 + 1 GUUGCAUGGUGGCCACACUGUAGUGAUCCAAGCUAUCGAACGUCUGCAGAUAGUGGGGAUUUAUCUGGGUGCAGUAGUCGCCUCCG------CU ...((..((.(((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).))).)))------). ( -29.50) >DroSim_CAF1 5423 94 + 1 GCUGCAUGGUGGCCACACUGUAGUGGUCCAAACUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCACUGUUGCU ((.((((((((((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).))))))).))).)). ( -36.70) >DroEre_CAF1 5852 94 + 1 GCUGCAUGGUGGCCACGCUGUAGUGGUCCAGGCUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGAGCAGUAGUCGCCGCCACUGUUGUU ((.((((((((((.(((((((.....(((((...((((...(((((((.....)))))))))))))))).))))).)).))))))).))).)). ( -36.20) >DroYak_CAF1 5475 94 + 1 GCUGCAUGGUGGCCACACUGUAGUGGUCCAGGCUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCAGUGUUGUU ((.((((((((((.((((((((....(((((...((((...(((((((.....)))))))))))))))))))))).)).))))))).))).)). ( -37.30) >DroPer_CAF1 5862 88 + 1 GUUGCAUGGUGGCCACACUGUAGUGAUCCAGGCUAUCGAAAGUCUGCAGAUAGUGGGGAUUUAUCUGGGUGCAGUAGUCGCCUCCG------CU ...((..((.(((.((((((((.(....((((((......))))))(((((((.......)))))))).)))))).)).))).)))------). ( -30.20) >consensus GCUGCAUGGUGGCCACACUGUAGUGGUCCAAGCUGUCGAAGGUCUGCAGAUAGUGCGGAUUGAUCUGGGUGCAGUAGUCGCCGCCA_UGUUGCU ......(((((((.((((((((.((((((..((((((...........))))))..)))))......).)))))).)).)))))))........ (-30.54 = -30.02 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:59 2006