Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,186,084 – 4,186,201 |
Length | 117 |
Max. P | 0.560149 |
Location | 4,186,084 – 4,186,201 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.45 |
Mean single sequence MFE | -30.82 |
Consensus MFE | -19.67 |
Energy contribution | -20.87 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.39 |
Mean z-score | -1.84 |
Structure conservation index | 0.64 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4186084 117 + 27905053 UCCAUUUCGGUUAUGUCCUCUACAUUCGUGUAAUCGAGGUACAUUACCCGGUACUUUGUCUGCUGCCGUGGAACAACUAUAAUCUGUUCCACUUUGCCACGAUACCAGGAACCCUCA (((.....(((.((((((((((((....))))...)))).)))).))).((((..((((..((....((((((((.........))))))))...)).)))))))).)))....... ( -34.40) >DroSec_CAF1 16633 117 + 1 UCCAUUUCGGUUACGUCCCCUACGUUCGUGGAAUCGAGGUCCAUUACCCGGUACUUCGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUGCCAGGAACCCUGA ........((......)).....((((.(((.((((((((((.......)).)))))....((.((.((((((((.........))))))))...)).))))).))).))))..... ( -36.20) >DroSim_CAF1 4792 117 + 1 UCCACUUCGGUUACGUCCCCUACGUUCGUGUAAUCGAGAUACAUUACCCGGUACUUCGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUCCCAGUUACCCUCA .....((((((((((.............))))))))))...........((((((..(((.((.((.((((((((.........))))))))...)).)))))...)).)))).... ( -29.62) >DroEre_CAF1 15193 117 + 1 UCCAUCUGAGUUAUGUCCUCUACAUUCGUGUAAUCCAGGUUCAUCACCCGGUACUUCGUCUGCUGCUGUGGAGCAACUAUAAUAUGUUCCACUCUGCCGCGAUACCAGGAACCCUCA ((((((((..(((..(...........)..)))..))))).........((((..((((..((....((((((((.........))))))))...)).)))))))).)))....... ( -29.20) >DroYak_CAF1 1878 117 + 1 UCCGUCUCAGUUAUGUCCUCUACGUUUGUGUAAUCCAGGUACAUUACUCGGUACUUUGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUACCAGGAACCCUCA (((((((.(((.(((((((.((((....))))....))).)))).))).)).))..((((.((.((.((((((((.........))))))))...)).))))))...)))....... ( -30.90) >DroAna_CAF1 3833 117 + 1 UCCUUCUCGGUUAUAUCAUUUACAUUCGUAUAGUCGACGUAAAGCACUCGAUACUCGGUCUGUUGAUUCGGCGAUGUCUUUAUCUGCUCGACUCUGGCACGAUACCAGGAGCCCUCA ..(((((.(((.....................(((((.((.....)))))))..((((((....((.(((((((((....)))).)).))).)).))).))).))))))))...... ( -24.60) >consensus UCCAUCUCGGUUAUGUCCUCUACAUUCGUGUAAUCGAGGUACAUUACCCGGUACUUCGUCUGCUGCUGUGGAACAACUAUAAUCUGUUCCACUUUGCCGCGAUACCAGGAACCCUCA (((((((((((((((.............)))))))))))).........((((..((((..((....((((((((.........))))))))...)).)))))))).)))....... (-19.67 = -20.87 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:58 2006