Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,180,059 – 4,180,174 |
Length | 115 |
Max. P | 0.816725 |
Location | 4,180,059 – 4,180,174 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -34.91 |
Consensus MFE | -26.60 |
Energy contribution | -27.16 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.78 |
Structure conservation index | 0.76 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4180059 115 + 27905053 UGCAAAUGAAAUGCAAACUUUGGCAGGCGGGAAAAUUGCUUUCGAAUGUUUCGUUUUUUACUCGCUUUUUAUUGGGCAUUUCCCUUUCUCGCCGGCCGG-----UGCCAACGCUCCAAAU ((((.......))))......(((.(((((((((........(((.....)))..........((((......)))).......))))))))).)))((-----.((....)).)).... ( -30.90) >DroSim_CAF1 30483 115 + 1 UGCAUAUGAAAUGCAAACUUUGGCAGGCGGGAAAAUUGCUUUCGAAUGUCUCGUUUUUUACUCGCUUUUUAUUCGCUCUCUCCCUUUCUCGCCUGCCGG-----UGCCAACGCUCCAAAU (((((.....)))))......(((((((((((((........((((((...((.........)).....)))))).........)))))))))))))((-----.((....)).)).... ( -35.43) >DroYak_CAF1 30551 120 + 1 UGCAUAUGAAAUGCAAACACUGGCAGGCGGGAAAAUUGCUUUCGAAUGCUUCGUUUUUUACUCGCUUUUUACUCGUUUUUUCCCUUUCUUGCCUGCCGGUGCGGUGCCAACGCUCCAAAU (((((.....)))))..(((((((((((((((((...((........))...((.....)).......................))))))))))))))))).((.((....)).)).... ( -38.40) >consensus UGCAUAUGAAAUGCAAACUUUGGCAGGCGGGAAAAUUGCUUUCGAAUGUUUCGUUUUUUACUCGCUUUUUAUUCGCUAUUUCCCUUUCUCGCCUGCCGG_____UGCCAACGCUCCAAAU ............(((....(((((((((((((((........((((((...((.........)).....)))))).........))))))))))))))).....)))............. (-26.60 = -27.16 + 0.56)
Location | 4,180,059 – 4,180,174 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -33.41 |
Consensus MFE | -24.48 |
Energy contribution | -25.59 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.16 |
Structure conservation index | 0.73 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4180059 115 - 27905053 AUUUGGAGCGUUGGCA-----CCGGCCGGCGAGAAAGGGAAAUGCCCAAUAAAAAGCGAGUAAAAAACGAAACAUUCGAAAGCAAUUUUCCCGCCUGCCAAAGUUUGCAUUUCAUUUGCA .....((((.((((((-----..(((.((.(((((.(((.....))).........(((((............))))).......)))))))))))))))).))))(((.......))). ( -30.00) >DroSim_CAF1 30483 115 - 1 AUUUGGAGCGUUGGCA-----CCGGCAGGCGAGAAAGGGAGAGAGCGAAUAAAAAGCGAGUAAAAAACGAGACAUUCGAAAGCAAUUUUCCCGCCUGCCAAAGUUUGCAUUUCAUAUGCA ....((.((....)).-----))((((((((.....((((((..((..........(((((............)))))...))..))))))))))))))......(((((.....))))) ( -33.02) >DroYak_CAF1 30551 120 - 1 AUUUGGAGCGUUGGCACCGCACCGGCAGGCAAGAAAGGGAAAAAACGAGUAAAAAGCGAGUAAAAAACGAAGCAUUCGAAAGCAAUUUUCCCGCCUGCCAGUGUUUGCAUUUCAUAUGCA ....((.((....)).))((((.(((((((......(((((((............((..((.....))...))...(....)...)))))))))))))).)))).(((((.....))))) ( -37.20) >consensus AUUUGGAGCGUUGGCA_____CCGGCAGGCGAGAAAGGGAAAAAACGAAUAAAAAGCGAGUAAAAAACGAAACAUUCGAAAGCAAUUUUCCCGCCUGCCAAAGUUUGCAUUUCAUAUGCA .....((((...((.......))((((((((.(((((........(((((......((.........))....))))).......))))).))))))))...))))((((.....)))). (-24.48 = -25.59 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:56 2006