Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,178,006 – 4,178,113 |
Length | 107 |
Max. P | 0.632222 |
Location | 4,178,006 – 4,178,113 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.01 |
Mean single sequence MFE | -29.77 |
Consensus MFE | -18.45 |
Energy contribution | -19.07 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.14 |
Mean z-score | -1.93 |
Structure conservation index | 0.62 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4178006 107 + 27905053 CUAGACACAAAUACAUACAUAAGC-----AAGUGACCCAUGCAAAUGCAUAUAGAU-----GGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCCUGUUUGUU--- ......(((((((..........(-----((.(.(((.(((((...((((((((..-----..)))))).))...)))))..)))....).)))((((.......))))))))))).--- ( -26.80) >DroSim_CAF1 28394 106 + 1 CUAGACACAAAUAC----AUAAGU-----AAGUGACCCAUGCAAAUGCAUAUAGAU-----GGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUUUGU ......(((((((.----((((((-----.....(((.(((((...((((((((..-----..)))))).))...)))))..))).........((((....)))))))))).))))))) ( -29.60) >DroYak_CAF1 28396 108 + 1 CUAGACACAAAUAC----AUAAGU-----AAGUGCCCCAUGCAAAUGCAUAUAGACUUUUAGGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUU--- .........((((.----((((((-----.((((((((((((....))))...(((((....(((((((.((....)))))))))...)))))))).)))))....)))))).))))--- ( -30.80) >DroAna_CAF1 24909 105 + 1 UUAGCCACAAAUAC----AUGAGUAAUUUAAGUAUCACAUGCAAAUGCAUAUAGGU-----GGCUAUGUG---CGGGCAUUUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUU--- ......(((((((.----.....(((((((..(((((.((((...(((((((((..-----..)))))))---)).)))).))))).)))))))((((....))))...))))))).--- ( -31.90) >consensus CUAGACACAAAUAC____AUAAGU_____AAGUGACCCAUGCAAAUGCAUAUAGAU_____GGCUAUAUAGCUUGUGCAUAUGGUAGUAAGUUGGGCGUACUCGUCGCUUGUUUGUU___ ......((((((..................(.((((..(((((...((((((((.........)))))).))...)))))..)))).).....(((((.......))))))))))).... (-18.45 = -19.07 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:54 2006