Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,169,823 – 4,169,916 |
Length | 93 |
Max. P | 0.766150 |
Location | 4,169,823 – 4,169,916 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.79 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -19.05 |
Energy contribution | -18.18 |
Covariance contribution | -0.87 |
Combinations/Pair | 1.21 |
Mean z-score | -1.09 |
Structure conservation index | 0.87 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4169823 93 + 27905053 GCAUAGGUGGCGAUGUAUGGUUGUGGCUUGGCUAUAUCAUUGCCUAAAAUCAACAGAGAUCAUGCAAGCAAGCCCACAAAACACAAAUACUCU-------------------------- ((((.((((((((((((((((((.....)))))))).))))))).....((....)).)))))))............................-------------------------- ( -20.30) >DroSim_CAF1 20221 93 + 1 GCAUAGGUGGCGAUGUAUGGUUGUGGCUUGGCUAUAUCAUUGCCUAAAAUCAACAGAGAUCAUGCAAACAAGCCGAUAAGACACAAAUACUUA-------------------------- ((((.((((((((((((((((((.....)))))))).))))))).....((....)).)))))))............................-------------------------- ( -20.30) >DroEre_CAF1 8152 89 + 1 GUAUAGGUGGCGAUGUAUGGUUAUGGCUUGGCUAUAUCAUUGCCUAAAACCAUAAGGGAUCAUGCACACAAGCCCACAAGAUUCAAAUA------------------------------ .....((((((((((((((((((.....)))))))).)))))))....)))....(((....((....))..)))..............------------------------------ ( -22.80) >DroYak_CAF1 19843 119 + 1 GUAUAGGUGGCGAUGUAUGGUUAUGGCUUGGCUAUAUCAUUGCCUAAAAUCGUAACGGAUCAUGUACACAAGCCCACAAGAUGCAAACACUUAAAUACAAAUAUUAAUAAAAUCAUAAG (((((((((((((((((((((((.....)))))))).)))))))............(.(((.(((..........))).))).)....)))))..)))..................... ( -24.20) >consensus GCAUAGGUGGCGAUGUAUGGUUAUGGCUUGGCUAUAUCAUUGCCUAAAAUCAAAAGAGAUCAUGCAAACAAGCCCACAAGACACAAAUACUUA__________________________ ((((.((((((((((((((((((.....)))))))).))))))).....((....)).)))))))...................................................... (-19.05 = -18.18 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:46 2006