Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,168,030 – 4,168,150 |
Length | 120 |
Max. P | 0.606197 |
Location | 4,168,030 – 4,168,150 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.28 |
Mean single sequence MFE | -43.77 |
Consensus MFE | -18.72 |
Energy contribution | -18.28 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.50 |
Mean z-score | -2.15 |
Structure conservation index | 0.43 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606197 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4168030 120 + 27905053 CUUUCCGGAUCCUGGCAGACCCACCAUGAUGACCAUUUCGCAGGGGUGGUCAUCGAGGGUCAAGUCAUCCGGAUCAAGCAGAGAUACUUGGUCCUGAACGCUAGUGGGUUCAAAGUCCGG ....((((((..((((.(((((....((((((((((..(...)..)))))))))).)))))..))))...((((((((........))))))))(((((.(....).)))))..)))))) ( -51.90) >DroPse_CAF1 19158 120 + 1 CUUCCCAGAUCCAGGCAGGCCGACCAUGAUGAUCAUCUCACACGAGUCCUCGUCGAAGUGGACAUCAUUUGGCUCAAACUGGGCUAUUUGGUCGUGCACGCAAGUGGGAUCAAAGUCGGG ...(((((.(((((...((((((..((((((.(((..((..((((....)))).))..))).))))))))))))....))))))).(((((((...(((....))).)))))))...))) ( -43.90) >DroEre_CAF1 5558 120 + 1 CUUCCCGGAUCCUGGCAGACCUACCAUGAUGACCAUUUCACAGGGGUGGUCAUCGAAGGUCAAGUUAUCUGGAUCAAACAGAGUCACUUGGUCCUGAACGCGAGUGGGAUCGAAGUCUGG ....((((((..((((.(((((....((((((((((..(...)..)))))))))).)))))......((((.......)))))))).((((((((..((....)))))))))).)))))) ( -48.10) >DroWil_CAF1 4366 120 + 1 CUUACCCGAACCGGGCAGGCCAACCAUUAUGAUCAUUUCGCAUUUAUUCGCAUCGAAUUCCACAUUAUCAGGCUCAAAUUGAGAUAUUGCAUCGUGAACAGCGGUUGGAUCGAAGUCUGG ..........((((((.((((((((.....((.....))((....(((((...)))))....(((.(((((.(((.....)))...))).)).)))....)))))))).))...)))))) ( -27.60) >DroYak_CAF1 18054 120 + 1 CUUUCCGGAUCCUGGCAGACCCACCAUGAUGACCAUUUCACAGGGGUGGUCAUCGAAGGUCAAGUCGUCUGGUUCAAACAGGGUCACUUGGUCCUGAAUGAUAGUGGGAUCAAAGUCAGG ..........((((((.(((((((..((((((((((..(...)..)))))))))).(((((((((..((((.......))))...)))))).)))........))))).))...)))))) ( -45.70) >DroPer_CAF1 19070 120 + 1 CUUCCCAGAUCCGGGCAGGCCGACCAUGAUGAUCAUCUCACACGAGUCCUCGUCGAAGUGGACAUCAUUUGGCUCAAACUGGGCUAUUUGGUCGUGCACGCAAGUGGGAUCAAAGUCGGG ((.(((......))).)).(((((.....(((((......(((((((((.(......).)))).(((..((((((.....))))))..))))))))(((....))).)))))..))))). ( -45.40) >consensus CUUCCCGGAUCCUGGCAGACCCACCAUGAUGACCAUUUCACAGGGGUGCUCAUCGAAGGUCAAAUCAUCUGGCUCAAACAGAGAUACUUGGUCCUGAACGCAAGUGGGAUCAAAGUCGGG ..........((.(((.(((((((.....(((.....)))(((((.(((((......)))))..(((..((((((.....))))))..)))))))).......))))).))...))).)) (-18.72 = -18.28 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:45 2006