Locus 1440

Sequence ID 3R_DroMel_CAF1
Location 4,155,166 – 4,155,286
Length 120
Max. P 0.634501
window2400

overview

Window 0

Location 4,155,166 – 4,155,286
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.52
Mean single sequence MFE -31.81
Consensus MFE -13.92
Energy contribution -14.40
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -2.50
Structure conservation index 0.44
SVM decision value 0.21
SVM RNA-class probability 0.634501
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4155166 120 - 27905053
UGGCGUAUACGCGACGCGUUGGCUGAGCCUCAGCUCAAGUCAACUGAGUUGUUAAAUUAAUUUUUUCUGCAUACCGAAUGCAUAUAAAUUUAUAUAUGCUGCAAGCAACCGGCGGCAGAA
..(((....)))(((..(((((((((((....)))).)))))))...)))..............((((((...(((...(((((((......)))))))((....))..)))..)))))) ( -37.10)
>DroPse_CAF1 4486 104 - 1
AGGCGUAUACGCAAUGCAAUUGCCGAGCCUCAGCACAACUCAACUGAGUUGUUAAAUUAAUUUUUUCUGCAAUACGAAUGCAUAUAAAUUUC-AUAAA----AAGAA-----------AA
..(((....))).((((((((((.((((....))(((((((....))))))).............)).))))).....))))).....((((-.....----..)))-----------). ( -22.50)
>DroSim_CAF1 3802 120 - 1
UGGCGUAUACGCGACGCGUUGGCUGAGCCUCAGCUCAAGUCAACUGAGUUGUUAAAUUAAUUUUUUCUGCAUGCCGAAUGCAUAUAAAUUUAUAUAUGCUGCAAGCAACCGGCGGCGGAA
..(((....)))(((..(((((((((((....)))).)))))))...)))..............((((((.(((((...(((((((......)))))))((....))..))))))))))) ( -40.70)
>DroYak_CAF1 3920 120 - 1
UGGCGUAUACGCGACGCGUUGGCUGAGCCUCAGCUCAAGUCAACUGAGUUGUUAAAUUAAUUUUUUCUGCAUGCCGAAUUCAUAUAAAUUUGUAUAGGCUGCAAGCAACCAGCGGCGGAA
..(((....)))..((((((((((((((....)))).)))))))((.((((((..............((((.(((.....((........))....))))))))))))))))))...... ( -36.23)
>DroPer_CAF1 4437 104 - 1
CGGCGUAUACGCAAUGCAAUUGCCGAGCCUCAGCACAACUCAACUGAGUUGUUAAAUUAAUUUUUUCUGCAAUACGAAUGCAUAUAAAUUUC-AUAAA----AAGAA-----------AA
..(((....))).((((((((((.((((....))(((((((....))))))).............)).))))).....))))).....((((-.....----..)))-----------). ( -22.50)
>consensus
UGGCGUAUACGCGACGCGUUGGCUGAGCCUCAGCUCAAGUCAACUGAGUUGUUAAAUUAAUUUUUUCUGCAUGCCGAAUGCAUAUAAAUUUAUAUAAGCUGCAAGCAACC_GCGGC_GAA
..(((....)))...(((..(((((.....)))))(((.((....)).)))................)))...........................(((((.........))))).... (-13.92 = -14.40 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:39 2006