Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,154,463 – 4,154,571 |
Length | 108 |
Max. P | 0.542546 |
Location | 4,154,463 – 4,154,571 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.69 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -11.80 |
Energy contribution | -11.52 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.06 |
Structure conservation index | 0.62 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542546 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4154463 108 - 27905053 AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC--------GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUC---- ............(((((((((((...........(((((((((((((((.(.((((.......)--------))).).))))))))).......))))))....))))))))))).---- ( -19.47) >DroPse_CAF1 3841 117 - 1 -AAUAUUGCCCUCAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCCAUUUGGGCCCAACACAAAAUUGAA--AAAAAUACAAAUCCAAAUUGGCAGCCAUUUUGAUAUUGCAUUG -...........(((((((((((..............(((((.........)))))(((((((.......(((..--.......))).......))))..))).)))))))))))..... ( -15.84) >DroSim_CAF1 3102 108 - 1 AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC--------GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUA---- ...........((((((((((((...........(((((((((((((((.(.((((.......)--------))).).))))))))).......))))))....))))))))))))---- ( -20.27) >DroYak_CAF1 3275 108 - 1 AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC--------GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUU---- ............(((((((((((...........(((((((((((((((.(.((((.......)--------))).).))))))))).......))))))....))))))))))).---- ( -19.47) >DroPer_CAF1 3788 118 - 1 -AAUAUUGCCCUCAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCCAUUUGGGCCCAACACAAA-UGGAAAAAAAAACACAAAUCCAAAUUGGCAGCCAUUUUGAUAUUUCAUUG -............((((((((((...........((((((.(....)((((((((((......).))))-)))))...................))))))....))))))))))...... ( -19.46) >consensus AUGUAUUGCCCUGAAUAUCAAAAACAUCAUUUCAUGCCAAAUUUAUAUUCAAUUCGGGCCCAAC________GAACUAAAUAUAAGUAUCCAAAUUGGCAGCCAUUUUGGUAUUUC____ ............(((((((((((.(((......)))....................(((((((...............................))))..))).)))))))))))..... (-11.80 = -11.52 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:38 2006