Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,152,265 – 4,152,370 |
Length | 105 |
Max. P | 0.566527 |
Location | 4,152,265 – 4,152,370 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.34 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -19.81 |
Energy contribution | -19.60 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.17 |
Mean z-score | -1.77 |
Structure conservation index | 0.65 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4152265 105 - 27905053 CGUGACCGACACUGGGCAUUCGUCUAUCCAUACAC---------------CCAGCCAUGUACCCAUCUACACGAAGGGUGUACGGAUAGGUGUGCCUCCACCUCCACUGCCACACUGGUG .(((.....))).((((((...(((((((.(((((---------------((..(..((((......)))).)..))))))).))))))).)))))).((((..............)))) ( -35.04) >DroSim_CAF1 914 103 - 1 CGUGACCGACACUGGGCGUUCGUCUAUCCAUACAC---------------CCAGCCAUGUACCCAUCCACACGAAGGGUGUACGUAUAGGUGUGCC--CACCUCCACUGCCACACCGGUG .(((.....)))((((((..(..((((.(.(((((---------------((..(..(((........))).)..))))))).).))))..)))))--))....(((((......))))) ( -29.70) >DroYak_CAF1 1097 118 - 1 CGUGACCGACACUGGGCAUUCGAACAUCCAUAUACCAUAUAUCCAUCCAUACAUCCAUAUACCCAUCUACACGAAGGGUGUACAUAUGCGUUUGCC--CACCUCCACUGCCACACCGGUG .(((.....)))((((((..((.......(((((...))))).........(((...(((((((.((.....)).)))))))...)))))..))))--))....(((((......))))) ( -26.90) >consensus CGUGACCGACACUGGGCAUUCGUCUAUCCAUACAC_______________CCAGCCAUGUACCCAUCUACACGAAGGGUGUACGUAUAGGUGUGCC__CACCUCCACUGCCACACCGGUG ....((((....((((((.......................................(((((((.((.....)).))))))).....(((((......)))))....)))).)).)))). (-19.81 = -19.60 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:33 2006