Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,147,800 – 4,147,910 |
Length | 110 |
Max. P | 0.983114 |
Location | 4,147,800 – 4,147,910 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.95 |
Mean single sequence MFE | -34.37 |
Consensus MFE | -15.74 |
Energy contribution | -14.62 |
Covariance contribution | -1.12 |
Combinations/Pair | 1.38 |
Mean z-score | -2.29 |
Structure conservation index | 0.46 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4147800 110 - 27905053 UGCAAUGGUAAAUCACAACAACACGAUUGCAUAAGGCUGCUGCUCGGUGCACCUGGACUUUCUCCUCCAUCUUGGUGC----------AUCGAAUGUCCAUGGCGUCCAUCAUCUUCUGA ((((((.((.............)).))))))...((.((((((((((((((((((((........))))....)))))----------)))))..))....)))).))............ ( -31.12) >DroSec_CAF1 8759 110 - 1 UGCAAUGGUAAAUCACAACAACACGAUUGCAUAAGGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC----------AUCGAAUGUCCAUGGCGUCCAUCAUCUUUUGA ((((((.((.............)).))))))...((.((((((((((((((((((((........))))....)))))----------)))))..))....)))).))............ ( -32.82) >DroEre_CAF1 8923 110 - 1 UGCAAUGGUAAAUCACAACAACGCGGUUGCAUAAAGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC----------ACCGAGUGUCCAUAGCGUCCAUCAUCUUUUGA .((.((((..............((((((......)))))).((((((((((((((((........))))....)))))----------)))))))..)))).))................ ( -43.00) >DroWil_CAF1 17680 110 - 1 GGAAAUGGAAAAAUAUAUCCACAUAGUUGCUGCGCACAGCAGUGCGAUGUAUAAGGACA-------CGAUCUUCAUGCUUUUCAAUACGUCGA---UCCAUACGAUCGAGUAACUCGUUG (((.(((......))).)))....(((((((.(((((....))))(((((((((((.((-------.(.....).))))))...)))))))((---((.....))))))))))))..... ( -26.60) >DroYak_CAF1 9207 110 - 1 UGCAAUGGUAGAUCACCACAACACGGUUGCAUAGGGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC----------AUCGGAUGUCCAUUGCGUCCAUCAUCUUUUGG .(((((((.(.(((.........((((.((.....)).))))..(((((((((((((........))))....)))))----------))))))).))))))))..(((........))) ( -38.30) >consensus UGCAAUGGUAAAUCACAACAACACGGUUGCAUAAGGCCGCUGCUCGGUGCACCUGGACCUUCUCCUCCAUCUUGGUGC__________AUCGAAUGUCCAUAGCGUCCAUCAUCUUUUGA .((.((((..........................(((....)))(((((((((.(((............))).)))))..........)))).....)))).))................ (-15.74 = -14.62 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:30 2006