Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,147,508 – 4,147,603 |
Length | 95 |
Max. P | 0.585436 |
Location | 4,147,508 – 4,147,603 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.81 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -16.98 |
Energy contribution | -18.22 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.31 |
Mean z-score | -1.48 |
Structure conservation index | 0.59 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4147508 95 + 27905053 -------------------------UAUUUCGAUCCCGGGAUUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGACUGCCGCCACGAACUAAGCCGUACUGGUGGCUC -------------------------..((((.((((((.((((....(((((........)))))....))))...)))))).))))..(((((((.(.((......)).)))))))).. ( -33.00) >DroSec_CAF1 8467 95 + 1 -------------------------UAUUUCGAUCCCGAGACUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGACUUCCGCCACGAACUAAGCCAUACUGGUGGCUC -------------------------..((((.((((((.((.((...(((((........)))))....))))...)))))).)))).....(((((.(............).))))).. ( -24.20) >DroEre_CAF1 8631 95 + 1 -------------------------UGCUUCGGUCCAGAGACUCGCUGAUCUACCUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGGCUGCCGCCACGAACGAAGCCAUAUUGGUGGCUU -------------------------.(((((.((((...((.((...(((((........)))))....)))).....)))).))))).(((((((...............))))))).. ( -29.26) >DroYak_CAF1 8915 95 + 1 -------------------------UGCUUCGCUCCCGAGACUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGGCUGCCGCCACGAACGAAGCCAUAUUGGUGGCUU -------------------------.(((((..(((((.((.((...(((((........)))))....))))...)))))..))))).(((((((...............))))))).. ( -28.26) >DroAna_CAF1 9922 120 + 1 ACCCAAAAAAUGGCAGAAGGACCUAUACUGAGAUCCUUCGAUGCGCUGGCUUACUUCAAUAAAUCAAAAUAUUGUAUUGGUUGGAAUCUACCAUCCCGUGAUGAACCAAAUUGGUGGAUU ............(((((((((.((......)).))))))..))).(..(((.....(((((........)))))....)))..)(((((((((.....((......))...))))))))) ( -28.80) >consensus _________________________UACUUCGAUCCCGAGACUCGCUGAUCUACUUAAACAGAUCCAUAGAUCAAAUGGGAUGGAGACUGCCGCCACGAACUAAGCCAUAUUGGUGGCUU ...........................((((.((((((.((.((...(((((........)))))....))))...)))))).))))..(((((((...............))))))).. (-16.98 = -18.22 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:29 2006