Locus 1432

Sequence ID 3R_DroMel_CAF1
Location 4,145,736 – 4,145,856
Length 120
Max. P 0.574779
window2389

overview

Window 9

Location 4,145,736 – 4,145,856
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.59
Mean single sequence MFE -57.35
Consensus MFE -41.66
Energy contribution -42.88
Covariance contribution 1.23
Combinations/Pair 1.15
Mean z-score -1.34
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.574779
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4145736 120 + 27905053
AUUCCACCCACUCCGACGCCCACUUGGCAACUGGCGCGCAGGGCAACAGCCUGAUGGUGGGCCAGGAUAUCGCUGACCGAGUGGGAGGAGGGCCAGUGGGCGGCAGCGGCUGCGGCGGCC
...((.((((((((..(.(((((((((((.(((((.(((.((((....))))....))).)))))(....)..)).))))))))).)..))...)))))).))..((.((....)).)). ( -59.90)
>DroPse_CAF1 8812 113 + 1
-------CCACUCCCACGCCCACCUGGCAGCUGGCCCGUAAGGCGACGGCUUGAUGGUGGGCCAGGAUAUCGCUAACCGAAUGCGACGAUGGCCAGUGGGCGGCUGCCGCGGCGGCGGCC
-------..........((((((.((((..(((((((((.((((....))))....)))))))))....((((.........)))).....))))))))))((((((((...)))))))) ( -57.20)
>DroWil_CAF1 14935 114 + 1
AC---GCCAACUCCUACCCCUACCUGGCAGCUGGCCCUCAGAGCAACGGCCUGAUGGUGGGCCAGUAUAUCGCUAACCGAGUGCGAUGACGGCCAAUGGGCAG---CGGCGGCAGCGGCC
..---(((..((.(..((.((.((((((.((((((((((((.((....))))))....)))))))).((((((.........))))))...))))..))..))---.))..).)).))). ( -45.70)
>DroYak_CAF1 6898 120 + 1
AUGCCACCCACGCCGACGCCCACCUGGCAACUGGCCCGCAGGGCGACCGCCUGAUGGUGGGCCAGGAUAUCGCUGACCGAGUGGGACGAGGGCCAGUGGGCGGCAGCAGCUGCGGCGGCC
.((((.((((((((..(((((((.(((((.(((((((((.((((....))))....)))))))))(....)..)).))).))))).))..)))..))))).))))((.((....)).)). ( -65.90)
>DroAna_CAF1 6615 120 + 1
AUUCCGCCCACUCCGACACCGACUUGGCAGCUGGCCCGGAGGGCUACUGCCUGGUGAUGGGCCAGGAUGUCGCUCACCGAGUGAGACGAUGGCCAGUGAGCGGCGGCAGCAGCGGCGGCC
...(((((((((.((.(((((....(((((.((((((...)))))))))))))))).))(((((...(.((((((...)))))).)...))))))))).((.((....)).))))))).. ( -57.90)
>DroPer_CAF1 9419 113 + 1
-------CCACUCCUACGCCCACCUGGCAGCUGGCCCGUAAAGCGACGGCUUGAUGGUGGGCCAGGAUAUCGCUUACCGAAUGCGACGAUGGCCAGUGGGCGGCUGCCGCGGCGGCGGCC
-------..........((((((.((((..(((((((((.((((....))))....)))))))))....((((.........)))).....))))))))))((((((((...)))))))) ( -57.50)
>consensus
AU____CCCACUCCGACGCCCACCUGGCAGCUGGCCCGCAGGGCGACGGCCUGAUGGUGGGCCAGGAUAUCGCUAACCGAGUGCGACGAUGGCCAGUGGGCGGCAGCAGCGGCGGCGGCC
............((..(((((((.((((..(((((((((.((((....))))....)))))))))....(((.....)))...........)))))))))))((.((....)).)))).. (-41.66 = -42.88 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:28 2006