Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,139,041 – 4,139,156 |
Length | 115 |
Max. P | 0.720642 |
Location | 4,139,041 – 4,139,156 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.47 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -28.48 |
Energy contribution | -28.12 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -1.51 |
Structure conservation index | 0.80 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4139041 115 + 27905053 C-----GCGAACAAAUCGUGAACAUGGCGCGCAAGAAUGCCCAGGCGGAGGACCUCUCCAACGUGGAGUUCGAGACGAGCGAGGAUGUGGAGGUGAUACCCACAUUCAACGCCAUGAAUC (-----((((.....)))))..((((((((((......((....))((((.....))))...)))..(((((...)))))..((((((((.(......)))))))))..))))))).... ( -43.10) >DroVir_CAF1 9284 118 + 1 UAAGUCAAGCACAA--GCUAAAAAUGGCGCGCAAGAAUGCACAGGCCGAGGAUCUCUCGAACGUGGAGUUUGAGACUAGCGAAGACGUUGAGGUGAUACCCACCUUCAAUGCCAUGAACC .......(((....--)))....(((((.(((.((...((....))........((((((((.....)))))))))).))).....(((((((((.....)))).))))))))))..... ( -33.00) >DroPse_CAF1 1612 112 + 1 U--------AAAACACAGUAAGAAUGGCGCGCAAGAAUGCCCAGGCCGAGGAUCUCUCGAACGUUGAGUUCGAGACCAGCGAAGAUGUGGAGGUAAUACCCACUUUUAAUGCCAUGAAUC .--------..............(((((((((......((....))...((...((((((((.....)))))))))).)))((((.((((.(......)))))))))..))))))..... ( -32.10) >DroYak_CAF1 227 115 + 1 C-----ACAAUCAAGCAGCAAACAUGGCGCGCAAGAAUGCCCAGGCGGAGGACCUCUCGAACGUGGAGUUCGAGACCAGCGAGGAUGUGGAGGUGAUUCCCACCUUCAACGCCAUGAAUC .-----................((((((((((.....(((....)))..((...((((((((.....)))))))))).)))......((((((((.....)))))))).))))))).... ( -43.30) >DroMoj_CAF1 5739 118 + 1 UUGAACACAUUCAA--GUCGAAAAUGGCGCGCAAAAAUGCACAGGCCGAGGAUCUCUCGAAUGUGGAGUUUGAGACAAGCGAAGAUGUGGAGGUAAUACCCACCUUCAAUGCCAUGAACC (((((....)))))--.......((((((((((....)))..............((((((((.....))))))))...))((((..((((.(......)))))))))...)))))..... ( -29.40) >DroPer_CAF1 1727 112 + 1 U--------AAAACACAGUAAGAAUGGCGCGCAAGAAUGCCCAGGCCGAGGAUCUCUCGAACGUUGAGUUCGAGACCAGCGAAGAUGUGGAGGUAAUACCCACUUUUAAUGCCAUGAAUC .--------..............(((((((((......((....))...((...((((((((.....)))))))))).)))((((.((((.(......)))))))))..))))))..... ( -32.10) >consensus U_____AC_AACAAACAGUAAAAAUGGCGCGCAAGAAUGCCCAGGCCGAGGAUCUCUCGAACGUGGAGUUCGAGACCAGCGAAGAUGUGGAGGUAAUACCCACCUUCAAUGCCAUGAAUC .......................(((((((((......((....))........((((((((.....))))))))...)))......(((((((.......))))))).))))))..... (-28.48 = -28.12 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:27 2006