Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 753,281 – 753,374 |
Length | 93 |
Max. P | 0.946367 |
Location | 753,281 – 753,374 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 70.64 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -16.62 |
Energy contribution | -14.99 |
Covariance contribution | -1.63 |
Combinations/Pair | 1.52 |
Mean z-score | -1.92 |
Structure conservation index | 0.52 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 753281 93 - 27905053 GUUAUGAUACUGGUAACUUCCGCUGUUGUAACUUCUUUCUUGAAGGGCAGCCGCAUAGGCAGAGGUGCUUGGUUGUUGCAGGAGAA---CAGGAAC ((((..(((.(((......))).)))..))))(((((((((.....(((((.((.((((((....)))))))).)))))..)))))---.)))).. ( -27.50) >DroVir_CAF1 14767 93 - 1 GUUGUGAUAUUGAUAGUUCAAGCUAUUAUAAUUACGUUCCUGG---GCAGCAGCGUAGGCCGAUGUGCUGGGCUGCUGCAGCAGGGGCAUGGCCAC ...(((((..(((((((....)))))))..)))))(((((((.---((((((((.(((((....)).))).))))))))..)))))))........ ( -40.20) >DroEre_CAF1 10212 93 - 1 GUUAUGAUACUGGUAACUUCCGCUGUUGUAACUUCUUUCUUGAAGGGCAGCCGCAUAGGCAGAGGUGCUUGGUUGCUGCAGGAGAA---CAGGAAC ((((..(((.(((......))).)))..))))...(((((((...(((((((((((........))))..))))))).))))))).---....... ( -29.90) >DroWil_CAF1 12379 81 - 1 GUUGUGGUAUUGAUA------GGUAUUGUAGCUACGCUCUUGG---GCGGCAGCAAAGGCAGAAGUACUUGGCUGCUGCAGCAU------AGGCAC ((((..(((((....------)))))..))))...(((..((.---((((((((.(((((....)).))).))))))))..)).------.))).. ( -31.10) >DroMoj_CAF1 12644 93 - 1 GUUGUGAUAUUGAUAGUUCAAGCUGUUAUAAUUUCGUUCUUGG---GCAGCAGCAUAAGCUGAUGUGCUUGGUUGCUGUAGCAUAGGCAUGGCCAC ((..(((...(((((((....))))))).....))(((..((.---((((((((.(((((......)))))))))))))..))..))))..))... ( -28.70) >DroAna_CAF1 10530 90 - 1 GUUGUGGUACUGGUAGCUGCCACUGUUGUAGCUCCUCUCCUGGACAGCGGCUGCGUAGGCAGAAGUGCUGGGCUGUUGCAAGAG------CGGCAC ..(((.((.((.(((((.(((...........(((......)))(((((.((((....))))...)))))))).))))).)).)------).))). ( -32.70) >consensus GUUGUGAUACUGAUAGCUCCCGCUGUUGUAACUUCGUUCUUGG___GCAGCAGCAUAGGCAGAAGUGCUUGGCUGCUGCAGCAGA_____AGGCAC (((((((((..............)))))))))..............(((((.((.(((((......))))))).)))))................. (-16.62 = -14.99 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:18 2006