Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,136,752 – 4,136,847 |
Length | 95 |
Max. P | 0.782959 |
Location | 4,136,752 – 4,136,847 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 90.18 |
Mean single sequence MFE | -30.01 |
Consensus MFE | -24.02 |
Energy contribution | -24.52 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.09 |
Mean z-score | -1.82 |
Structure conservation index | 0.80 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4136752 95 - 27905053 GGGGCGUAUACUCAACACACCUCGCUAAGCUUCCGAACACUCCUCCGUGUUCACACGCGGAUCUGCGAGGAAGCGAACAAUCAUCGGACUUCAUC ((((.((.........)).)))).....((((((((((((......))))))...((((....)))).))))))..................... ( -28.50) >DroSec_CAF1 3569 95 - 1 GGGGCAUGCACUCAACACACCUCGCUAAGCUUCCGAACACUCCUCCGUGUUCACACGCGGAUCUGCGAGGAAGCGAACAAUCAUCGGACUCCAUC (((((..((..............))...((((((((((((......))))))...((((....)))).))))))............).))))... ( -27.94) >DroEre_CAF1 4002 95 - 1 GGGGCGUAUACUCAACGCAGCCCGGUAAACUUCCGAACACUCCUCCGUGUUCACGCGCGGAUUUGCGAGGAAGCGAACAAUCAUCGGACACCGUG (((((((.......))))..)))(((...(((((((((((......)))))).((((......)))).)))))(((.......)))...)))... ( -30.50) >DroYak_CAF1 7352 95 - 1 GGGGCGUAUACUCAACGCGCCCCGCUAAACUUCCGAACACUCCUCCGUGUUCACACGCGGAUUUGCGAGGAAGCGAACAAUCAUCGCUCACCAUC (((((((.........))))))).......((((((((((......))))))...((((....)))).))))((((.......))))........ ( -33.10) >consensus GGGGCGUAUACUCAACACACCCCGCUAAACUUCCGAACACUCCUCCGUGUUCACACGCGGAUCUGCGAGGAAGCGAACAAUCAUCGGACACCAUC ((((.((.........)).)))).....((((((((((((......))))))...((((....)))).))))))..................... (-24.02 = -24.52 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:16 2006