Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,132,576 – 4,132,667 |
Length | 91 |
Max. P | 0.718031 |
Location | 4,132,576 – 4,132,667 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 69.61 |
Mean single sequence MFE | -30.93 |
Consensus MFE | -16.90 |
Energy contribution | -17.93 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.64 |
Structure conservation index | 0.55 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4132576 91 + 27905053 UGGACGGCAUACAAAUGGCGAUGCUGCGAUGCGAGUGAUGAUACAAACGACGUGUUAGCUUGCUUGUUUGUUUGUCACUUGCGCCGCGU-----GC ....((.(((....))).))..((((((.(((((((((..(.((((((((.(((......))))))))))))..))))))))).)))).-----)) ( -35.10) >DroSim_CAF1 3324 91 + 1 UGGACGGCAUACAAAUGGCGAUGCUGCGAUGCGAGUGAUGCUACACACGCCGUGUUAGCUCGCUUGUUUGUUUGCCACUUGCGCCGCGU-----GC ..(.((((...(((.((((((....((((.((((((((.(((((((.....))).)))))))))))))))))))))).))).)))))..-----.. ( -35.20) >DroYak_CAF1 2954 81 + 1 UGGAGGGCAAACAAAUGGCUUCUUUGGGACGAGAGUGA---UACACAUGCC------------CAGUUUGUUUGUCACUUGCGAUGGUUCGGCGAU ..(((((((((((((((((.....((..((....))..---)).....)))------------..))))))))))).))).(((....)))..... ( -22.50) >consensus UGGACGGCAUACAAAUGGCGAUGCUGCGAUGCGAGUGAUG_UACACACGCCGUGUUAGCU_GCUUGUUUGUUUGUCACUUGCGCCGCGU_____GC ....((.(((....))).)).....(((.((((((((((...(((.((...(((......)))..)).)))..)))))))))).)))......... (-16.90 = -17.93 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:15 2006