Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,130,714 – 4,130,831 |
Length | 117 |
Max. P | 0.721756 |
Location | 4,130,714 – 4,130,831 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -39.18 |
Consensus MFE | -27.23 |
Energy contribution | -28.85 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.24 |
Mean z-score | -1.76 |
Structure conservation index | 0.69 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4130714 117 + 27905053 AGCCAUCCGCCGUCAUGUGGACUCGCUUCUGGG---UAAUCUCCACAGCAUAGUUCUUAUCGACGGCGUUCUUCAGGAGCACGGUGAUGACCACCUUGGUCUCCGACUGGUACCAGUCGU .(((....(((((((((.(((((.(((..((((---.....)))).)))..))))).))).))))))((((.....))))..)))((.((((.....))))))((((((....)))))). ( -45.20) >DroSim_CAF1 945 117 + 1 AGCCAUCCGCCGUCAUGUGGACUCGGUUCUGGG---UAAUCUCCACAGCGUAGUUCUUCUCGACGGCGUUCUUCAGGAGCACGGUGAUGACCACCUUGGUCUCCGACUGGUACCAGUCGU .(((....((((((..(.(((((((...(((((---......)).))))).)))))..)..))))))((((.....))))..)))((.((((.....))))))((((((....)))))). ( -44.10) >DroWil_CAF1 1371 117 + 1 AGCCAUCGGCCGUCAGAUGUAUUU---UUUGUGACUCAAUUUUGACGUCAUAGUUCUUCUGGGCAGCGUUCUUUAGCAAAACAGUGAUAACCACUUUGGACUCUGAUUGAUACCAAUCGU ..(((...(((..((((.(.....---.((((((((((....))).)))))))..).))))))).((........)).....((((.....)))).))).....(((((....))))).. ( -24.90) >DroYak_CAF1 950 117 + 1 AGCCAUCCGCCGUCAUGUGGACUCGCUUCUCGG---AAAUCUCCACAGCGAAGUUCUUAUCGGCGGCGUUCUUCAGGAGCACGGUGAUGACCACCUUUGUCUCCGAUUGAUACCAGUCAU .......((((((((((.(((((((((....((---(....)))..)))).))))).))).))))))).......((((((.((((.....))))..)).))))(((((....))))).. ( -42.50) >consensus AGCCAUCCGCCGUCAUGUGGACUCGCUUCUGGG___UAAUCUCCACAGCAUAGUUCUUAUCGACGGCGUUCUUCAGGAGCACGGUGAUGACCACCUUGGUCUCCGACUGAUACCAGUCGU .......((((((((((.(((((((((..((((........)))).)))).))))).))).))))))).......(((((..((((.....))))...).))))(((((....))))).. (-27.23 = -28.85 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:13 2006