Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,130,403 – 4,130,563 |
Length | 160 |
Max. P | 0.901734 |
Location | 4,130,403 – 4,130,523 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.56 |
Mean single sequence MFE | -43.96 |
Consensus MFE | -29.31 |
Energy contribution | -30.00 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.22 |
Mean z-score | -2.01 |
Structure conservation index | 0.67 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4130403 120 + 27905053 UCCGGACUCCGAGAAGGACUUGUUCAUGGCCUUUUGGACCUCGGGCGAGGAUGAGCUGUAGAUUUUCUUGAACAGGUUGGUGAGGGCCGCCUCGCCCUUGGCCUCCUUCUCGUCGAUCUU ...((((..(((((((((.........((((.....(((((.(..((((((....(....)...))))))..))))))(((((((....)))))))...)))))))))))))..).))). ( -45.30) >DroSim_CAF1 634 120 + 1 UCCCGACUCCGAGAAGGACUUGUUCAUGGCCUUUUGGACCUCGGGCGAGGAUGAGCUGUAGAUUUUCUUGAACAGGUUGGUGAGUGCCGCCUCGCCCUUGGCCUCCUUCUCGGCGAUCUU ....(((.((((((((((.........((((.....(....)((((((((..((.((((((.....))...)))).))(((....))).))))))))..)))))))))))))).).)).. ( -47.60) >DroWil_CAF1 1051 120 + 1 GCCGGACUCCGUAAAUGAUUUGUUCAUGGCCAUUUGCACCUCCGGUGUGGAGGUGCUGUAGAUCUUUUUGAAUAAUUGAUUGAGAGCCGCUUCACCUUUGGCUUCUUUUUCAUCGAUCUU (((((...))....((((.....))))))).....((((((((.....))))))))...(((((............(((..((((((((.........)))).))))..)))..))))). ( -32.94) >DroYak_CAF1 636 120 + 1 UCCGGAUUCCGAGAAGGACUUGUUCAUGGCCUUUUGGACCUCGGGCGAGGAUGUGCUGUAGAUCUUCUUGAACAGGUUGUUGAGGGCCGUCUCGCCCUUAGCCUCCUUCUCGUCGAUCUU ...(((((.(((((((((((((((((..((((..........))))((((((.((...)).)))))).))))))))..(((((((((......))))))))).)))))))))..))))). ( -50.00) >consensus UCCGGACUCCGAGAAGGACUUGUUCAUGGCCUUUUGGACCUCGGGCGAGGAUGAGCUGUAGAUCUUCUUGAACAGGUUGGUGAGGGCCGCCUCGCCCUUGGCCUCCUUCUCGUCGAUCUU .........(((((((((...(((((........)))))...((((((((....(((.(.(((..(((.....)))..))).).)))..))))))))......)))))))))........ (-29.31 = -30.00 + 0.69)
Location | 4,130,403 – 4,130,523 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.56 |
Mean single sequence MFE | -38.70 |
Consensus MFE | -29.35 |
Energy contribution | -29.60 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.18 |
Mean z-score | -2.12 |
Structure conservation index | 0.76 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4130403 120 - 27905053 AAGAUCGACGAGAAGGAGGCCAAGGGCGAGGCGGCCCUCACCAACCUGUUCAAGAAAAUCUACAGCUCAUCCUCGCCCGAGGUCCAAAAGGCCAUGAACAAGUCCUUCUCGGAGUCCGGA ..((.(..(((((((((((((..((((((((.((......))...((((...((.....)))))).....))))))))..)))).....(........)...)))))))))..))).... ( -42.70) >DroSim_CAF1 634 120 - 1 AAGAUCGCCGAGAAGGAGGCCAAGGGCGAGGCGGCACUCACCAACCUGUUCAAGAAAAUCUACAGCUCAUCCUCGCCCGAGGUCCAAAAGGCCAUGAACAAGUCCUUCUCGGAGUCGGGA ..(((..((((((((((((((..((((((((.((......))...((((...((.....)))))).....))))))))..)))).....(........)...)))))))))).))).... ( -45.80) >DroWil_CAF1 1051 120 - 1 AAGAUCGAUGAAAAAGAAGCCAAAGGUGAAGCGGCUCUCAAUCAAUUAUUCAAAAAGAUCUACAGCACCUCCACACCGGAGGUGCAAAUGGCCAUGAACAAAUCAUUUACGGAGUCCGGC .(((((..((((.((((((((...........)))).))......)).))))....)))))...((((((((.....)))))))).....(((((((.....))))....((...))))) ( -29.30) >DroYak_CAF1 636 120 - 1 AAGAUCGACGAGAAGGAGGCUAAGGGCGAGACGGCCCUCAACAACCUGUUCAAGAAGAUCUACAGCACAUCCUCGCCCGAGGUCCAAAAGGCCAUGAACAAGUCCUUCUCGGAAUCCGGA ..(((...(((((((((......(((((((..(........)...((((...((.....))))))......)))))))..((((.....)))).........)))))))))..))).... ( -37.00) >consensus AAGAUCGACGAGAAGGAGGCCAAGGGCGAGGCGGCCCUCAACAACCUGUUCAAGAAAAUCUACAGCACAUCCUCGCCCGAGGUCCAAAAGGCCAUGAACAAGUCCUUCUCGGAGUCCGGA ..(((...(((((((((......((((((((..((..........((.....))..........))....))))))))..((((.....)))).........)))))))))..))).... (-29.35 = -29.60 + 0.25)
Location | 4,130,443 – 4,130,563 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.75 |
Mean single sequence MFE | -39.71 |
Consensus MFE | -29.76 |
Energy contribution | -30.82 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.20 |
Mean z-score | -1.49 |
Structure conservation index | 0.75 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.556138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4130443 120 + 27905053 UCGGGCGAGGAUGAGCUGUAGAUUUUCUUGAACAGGUUGGUGAGGGCCGCCUCGCCCUUGGCCUCCUUCUCGUCGAUCUUUUCCUCCUCGCUGACCAGCUGGUCCCAGUUCUUGGCCUUG ..(((((((((.(((....(((((..(..(((.((((((((((((....)))))))...)))))..)))..)..))))).))).)))))))...(((((((....))))...)))))... ( -43.00) >DroSim_CAF1 674 120 + 1 UCGGGCGAGGAUGAGCUGUAGAUUUUCUUGAACAGGUUGGUGAGUGCCGCCUCGCCCUUGGCCUCCUUCUCGGCGAUCUUCUCCUCCUCGUUGACCAGCUGGUCCCAGUUUUUGGCCUUG ..((((((((..((.((((((.....))...)))).))(((....))).))))))))..((((......(((((((...........)))))))..(((((....)))))...))))... ( -42.20) >DroWil_CAF1 1091 120 + 1 UCCGGUGUGGAGGUGCUGUAGAUCUUUUUGAAUAAUUGAUUGAGAGCCGCUUCACCUUUGGCUUCUUUUUCAUCGAUCUUUUCCUCCUCCUUGACCAAAAGGUCCCAGUUCUUUGUUUGC ...((...(((((.(....(((((............(((..((((((((.........)))).))))..)))..)))))....).)))))..((((....)))))).............. ( -28.34) >DroYak_CAF1 676 120 + 1 UCGGGCGAGGAUGUGCUGUAGAUCUUCUUGAACAGGUUGUUGAGGGCCGUCUCGCCCUUAGCCUCCUUCUCGUCGAUCUUCUCCUCCUCGCUGACCAGCUGGUCCCAGUUCUUGGCCUUA ..(((((((((.(.(....(((((....(((..(((..(((((((((......)))))))))..)))..)))..))))).).).)))))))...(((((((....))))...)))))... ( -45.30) >consensus UCGGGCGAGGAUGAGCUGUAGAUCUUCUUGAACAGGUUGGUGAGGGCCGCCUCGCCCUUGGCCUCCUUCUCGUCGAUCUUCUCCUCCUCGCUGACCAGCUGGUCCCAGUUCUUGGCCUUG ...((((((((.(((....(((((....(((..(((..(((((((((......)))))))))..)))..)))..))))).))).))))))))((((....))))................ (-29.76 = -30.82 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:12 2006