Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,125,264 – 4,125,384 |
Length | 120 |
Max. P | 0.665279 |
Location | 4,125,264 – 4,125,384 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.17 |
Mean single sequence MFE | -43.22 |
Consensus MFE | -24.26 |
Energy contribution | -23.30 |
Covariance contribution | -0.96 |
Combinations/Pair | 1.50 |
Mean z-score | -1.76 |
Structure conservation index | 0.56 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4125264 120 + 27905053 AAAGCGUACGUGCGAGUCAGCUCAUCCAUGGCUUCAAUUGCCGAGUUGAGGCGAGUUUUCAGCGGUUCGAUGGUGCCCCGAUCCGCCCGAUAGGGCUGGCACUUGGAGCAAGAGUGCUUA .(((((..((((.(((....)))...))))(((((((.(((((.(((((((.....)))))))((.(((.........))).))((((....))))))))).))))))).....))))). ( -43.50) >DroVir_CAF1 21980 120 + 1 AAUGCGUAGGUGCGAGUGAGCUGAUCCAUGGCCUCAAUGGCAGUGUUAAGACGAUUCUUGAGCGGCUCAAUUGUGCCACGAUCUGCCCGGUACGGCUGGCAGAAAUAACAGCUAUGCUUC ...(((((((..(((.(((((((...(((.(((.....))).)))((((((....)))))).))))))).)))..))....((((((.((.....)))))))).........)))))... ( -45.20) >DroPse_CAF1 30176 120 + 1 AGCGCAUACGUGCGUGUCAGUUCGUCCAUGGCCUCAAUGGCUGAGUUUAAGCGAGUCUUUAGCGGCUCAAUGGUGCCUCGAUCGGCACGAUACGGCUGACAGAAGAAGCACGUGUGCUUU ...((((((((((.(((((((.(((.(((((((.....))))..........(((((......))))).)))(((((......)))))...))))))))))......))))))))))... ( -49.80) >DroGri_CAF1 33944 120 + 1 AUAGCACAGGUGCGUGUGAUCUGAUCCAUCGCUUCAAUGGCCGAAUUGAGCCGAGUCUUGAGCGGCUCAAUUGUGCCGCGAUCUGCUCGAUAGGGAUGACAGAAAUAGCAACUAUGCUUG ..((((.((.(((.(((..((((...((((.((((...(((..((((((((((.........))))))))))..)))((.....))..)).)).)))).)))).)))))).)).)))).. ( -40.90) >DroWil_CAF1 18679 120 + 1 AAAGCAUAGGUGUGAUUUAGUUCAUCCAUGGCCUCGAUGGCUGAGUUUAGACGUAUCUUAAGCGGCUCAAUUGUUCCUCUAUCUGCUCGAUAAGGCUGACAGAAGAAGCAACUAUGUUUU (((((((((((.(((((((((.((((.........)))))))))).))).))((.((((...(((((..((((..(........)..))))..)))))....)))).))..))))))))) ( -30.10) >DroPer_CAF1 30179 120 + 1 AGCGCAUACGUGCGUGUCAGUUCGUCCAUGGCCUCAAUGGCUGAGUUUAAGCGAGUCUUUAGCGGCUCAAUGGUGCCUCGAUCGGCACGAUACGGCUGACAGAAGAAGCACGUGUGCUUU ...((((((((((.(((((((.(((.(((((((.....))))..........(((((......))))).)))(((((......)))))...))))))))))......))))))))))... ( -49.80) >consensus AAAGCAUACGUGCGAGUCAGCUCAUCCAUGGCCUCAAUGGCUGAGUUUAGGCGAGUCUUGAGCGGCUCAAUGGUGCCUCGAUCUGCACGAUACGGCUGACAGAAGAAGCAACUAUGCUUU ...((((((.(((..(((((((.(((..(((((.....)))))..................(.(((........))).).........)))..))))))).......))).))))))... (-24.26 = -23.30 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:09 2006