Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,118,095 – 4,118,202 |
Length | 107 |
Max. P | 0.748036 |
Location | 4,118,095 – 4,118,202 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 81.25 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -23.08 |
Energy contribution | -23.88 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -2.05 |
Structure conservation index | 0.63 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4118095 107 - 27905053 CAGACAACUGCAAGUCCACCUGUUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUUGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA---AUGCUUUU ..(((........))).....(((((((((((.((.(((((.((((...))))..)))))........((.....))........))...)))))))))---))...... ( -30.50) >DroPse_CAF1 23360 110 - 1 UGGACAGCUGCAAGUCCUUCUGCUGCUGCAUUAGCAGGUUGUCCAGCUCCUGGUGGCCACUCGCGUAGGCACUCAGGAGCACACAGCUAAGCAAGAGCAGAGAUACUUUA .((((........))))(((((((..(((.(((((.((....)).((((((((((.((((....)).))))).))))))).....))))))))..)))))))........ ( -46.30) >DroSec_CAF1 16910 107 - 1 CAGACAACUGCAAGUCCACCUGUUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUGGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA---AUGCUUUU ..(((........))).....(((((((((((..........((((...))))((((((.........((.....)).......)))))))))))))))---))...... ( -32.49) >DroSim_CAF1 14210 107 - 1 CAGACAACUGCAAGUCCACCUGUUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUGGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA---AUGCUUUU ..(((........))).....(((((((((((..........((((...))))((((((.........((.....)).......)))))))))))))))---))...... ( -32.49) >DroEre_CAF1 19150 107 - 1 CAGACAACUGCAAGUCCACCUGCUGCUUCUGCAGCAGAUUCUCCAGUUCCUGGUGGGCUUCACCAAAGGCGAAGAGCAGCACACAGGCCAGCAGAAGCA---AUGCUUUU .......(((((((((((((((((((....)))))))......(((...))))))))))).......(((................))).))))((((.---..)))).. ( -34.19) >DroPer_CAF1 23315 110 - 1 UGGACAGCUGCAAGUCCUUCUGCUGCUGCAUUAGCAGGUUGUCCAGCUCCUGGUGGCCACUCGCGUAGGCACUCAGGAGCACACAGCUCAGCAAGAGCAGAGAUACUUUA ((((((((.(((........)))..((((....))))))))))))((((((((((.((((....)).))))).))))))).....((((.....))))............ ( -44.70) >consensus CAGACAACUGCAAGUCCACCUGCUGCUUCUGCAGCAGAGUCUCCAGUUCCUGGUGGGCUUCACCAAAAGCGAAGAGCAGCACACAGCCCAGCAGAAGCA___AUGCUUUU .......((((..((((..(((((((....))))))).....((((...)))).))))..........((........))..........))))(((((....))))).. (-23.08 = -23.88 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:08 2006