| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,101,429 – 4,101,579 |
| Length | 150 |
| Max. P | 0.627827 |
| Location | 4,101,429 – 4,101,539 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.57 |
| Mean single sequence MFE | -42.40 |
| Consensus MFE | -31.00 |
| Energy contribution | -31.89 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4101429 110 - 27905053 AAAGCGAAAGGAGCAGGAGUCUGGACA------CGGACAUGGACAUGGACAUGCAAUCGGCAUGGCAUGCCAUCUCCGCAACUGGGGUAGUUCCCAUUCCCCCA----GUUCCGUGCACG ...(((...(((((.((((((((....------)))))((((.((((..(((((.....))))).)))))))).))))).(((((((.(((....))).)))))----))))).)))... ( -45.90) >DroSim_CAF1 13380 110 - 1 AAAGCAAAAGGAGCAGGAGUCUGGACA------CGGAAAUGGACAUGGACAUGCAAUCGGCGUGGCAUGCCAUCUCCGCAACUGGGGUAGUUCCCAUUCCCCCA----GAUCCAUCCACG .........(((...(((.(((((...------((((.((((.((((..(((((.....))))).)))))))).))))....(((((....))))).....)))----))))).)))... ( -42.90) >DroYak_CAF1 13464 120 - 1 AAAGCGAAAGGAGCAGGAGUCUGGACCUGGACCUGGACAUGGACAUGGACAUGCAAUCACCCUGGCAUGCCAUCUCCGCAACUGGGGUAGUUCCCAUUCCCCCGCAUGGCCCCCUCCACG ...(((...(((((....(((..(........)..)))..(((.((((.(((((..........))))))))).)))))...(((((....))))).)))..))).(((......))).. ( -38.40) >consensus AAAGCGAAAGGAGCAGGAGUCUGGACA______CGGACAUGGACAUGGACAUGCAAUCGGCAUGGCAUGCCAUCUCCGCAACUGGGGUAGUUCCCAUUCCCCCA____GAUCCAUCCACG .........(((((........(((........((((.((((.((((..(((((.....))))).)))))))).))))....(((((....))))).)))........)))))....... (-31.00 = -31.89 + 0.89)
| Location | 4,101,465 – 4,101,579 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.81 |
| Mean single sequence MFE | -36.57 |
| Consensus MFE | -32.63 |
| Energy contribution | -33.30 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.89 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4101465 114 - 27905053 UAGCAUUUAACACUCUGUCCCAUUUUGCAGACGAGAGCGAAAAGCGAAAGGAGCAGGAGUCUGGACA------CGGACAUGGACAUGGACAUGCAAUCGGCAUGGCAUGCCAUCUCCGCA ..((...........(((((..((((((...(....((.....))....)..))))))....)))))------.(((.((((.((((..(((((.....))))).)))))))).))))). ( -37.90) >DroSim_CAF1 13416 114 - 1 UAGCAUUUAACACUCUGUCCCAUUUUGCAGACGAGAGCGAAAAGCAAAAGGAGCAGGAGUCUGGACA------CGGAAAUGGACAUGGACAUGCAAUCGGCGUGGCAUGCCAUCUCCGCA ..((.......((((((..((.((((((...((....))....))))))))..)).)))).......------.(((.((((.((((..(((((.....))))).)))))))).))))). ( -37.60) >DroYak_CAF1 13504 120 - 1 UAGCAUUUAACACUCUGUCCCAUUUUACAGACGAGAGCGAAAAGCGAAAGGAGCAGGAGUCUGGACCUGGACCUGGACAUGGACAUGGACAUGCAAUCACCCUGGCAUGCCAUCUCCGCA ..((...........(((((................((.....))...(((..((((........))))..)))))))).(((.((((.(((((..........))))))))).))))). ( -34.20) >consensus UAGCAUUUAACACUCUGUCCCAUUUUGCAGACGAGAGCGAAAAGCGAAAGGAGCAGGAGUCUGGACA______CGGACAUGGACAUGGACAUGCAAUCGGCAUGGCAUGCCAUCUCCGCA ..((.......((((((..((.((((((...((....))....))))))))..)).))))..............(((.((((.((((..(((((.....))))).)))))))).))))). (-32.63 = -33.30 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:03 2006