Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,098,706 – 4,098,866 |
Length | 160 |
Max. P | 0.997525 |
Location | 4,098,706 – 4,098,826 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.33 |
Mean single sequence MFE | -29.06 |
Consensus MFE | -28.26 |
Energy contribution | -28.46 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.31 |
Structure conservation index | 0.97 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4098706 120 + 27905053 GGUGAUAAUCGGUCUGACUUCUGACUGACCAUCCACUCCUGCUCCUGAUCCCACUCCAUUUAUAUCUGCGAUUCGCGUACGGUACGCGAAUUUCGCUGUUUCGCCUAAUUAAAUGUAAUU (((((...((((((........)))))).......................................((((((((((((...))))))))..))))....)))))............... ( -28.10) >DroSec_CAF1 10615 120 + 1 GGUGGUAAUCGGUCUGACUUCUGACUGACCAUCCACUCCUGCUCCUGAUCCCACUCCAUUUAUAUCUGCGAUUCGCGUACGGUACGCGAAUUUCGCUGUUUCGCCUAAUUAAAUGUAAUU (((((...((((((........))))))....)))))...................((((((.....((((((((((((...))))))))..........)))).....))))))..... ( -29.30) >DroSim_CAF1 10641 120 + 1 GGUGGUAAUCGGUCUGACUUCUGACUGACCAUCCACUCCUGCUCCUGAUCCCACUCCAUUUAUAUCUGCGAUUCGCGUACGGUACGCGAAUUUCGCUGUUUCGCCUAAUUAAAUGUAAUU (((((...((((((........))))))....)))))...................((((((.....((((((((((((...))))))))..........)))).....))))))..... ( -29.30) >DroEre_CAF1 10666 120 + 1 GGUGGUAAUCGGUCUGACUUCUGACUGACCAUCCACUUCUGCUCCUGAUCCCACUCCAUUUAUAUCUGCGAUUCGCGUACGGUACGCGAAUUUCGCUGUUUCGCCUAAUUAAAUGUAAUU (((((...((((((........))))))....)))))...................((((((.....((((((((((((...))))))))..........)))).....))))))..... ( -29.30) >DroYak_CAF1 10617 120 + 1 GGUGGUAAUCGGUCUGACUUCUGACUGACCAUCCACUCCUGCUCCUGAUCCCACUCCAUUUAUAUCUGCGAUUCGCGUACGGUACGCGAAUUUCGCUGUUUCGCCUAAUUAAAUGUAAUU (((((...((((((........))))))....)))))...................((((((.....((((((((((((...))))))))..........)))).....))))))..... ( -29.30) >consensus GGUGGUAAUCGGUCUGACUUCUGACUGACCAUCCACUCCUGCUCCUGAUCCCACUCCAUUUAUAUCUGCGAUUCGCGUACGGUACGCGAAUUUCGCUGUUUCGCCUAAUUAAAUGUAAUU (((((...((((((........))))))....)))))...................((((((.....((((((((((((...))))))))..........)))).....))))))..... (-28.26 = -28.46 + 0.20)
Location | 4,098,746 – 4,098,866 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -32.40 |
Energy contribution | -32.40 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.31 |
Structure conservation index | 1.00 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4098746 120 - 27905053 ACUAUUUAUAUGCAUUAUUUCGGCUGAAAAGGAAGUACCAAAUUACAUUUAAUUAGGCGAAACAGCGAAAUUCGCGUACCGUACGCGAAUCGCAGAUAUAAAUGGAGUGGGAUCAGGAGC .((((((((((......(((((.((((....((((((......))).)))..)))).)))))..((((..((((((((...))))))))))))..))))))))))............... ( -32.40) >DroSec_CAF1 10655 120 - 1 ACUAUUUAUAUGCAUUAUUUCGGCUGAAAAGGAAGUACCAAAUUACAUUUAAUUAGGCGAAACAGCGAAAUUCGCGUACCGUACGCGAAUCGCAGAUAUAAAUGGAGUGGGAUCAGGAGC .((((((((((......(((((.((((....((((((......))).)))..)))).)))))..((((..((((((((...))))))))))))..))))))))))............... ( -32.40) >DroSim_CAF1 10681 120 - 1 ACUAUUUAUAUGCAUUAUUUCGGCUGAAAAGGAAGUACCAAAUUACAUUUAAUUAGGCGAAACAGCGAAAUUCGCGUACCGUACGCGAAUCGCAGAUAUAAAUGGAGUGGGAUCAGGAGC .((((((((((......(((((.((((....((((((......))).)))..)))).)))))..((((..((((((((...))))))))))))..))))))))))............... ( -32.40) >DroEre_CAF1 10706 120 - 1 ACUAUUUAUAUGCAUUAUUUCGGCUGAAAAGGAAGUACCAAAUUACAUUUAAUUAGGCGAAACAGCGAAAUUCGCGUACCGUACGCGAAUCGCAGAUAUAAAUGGAGUGGGAUCAGGAGC .((((((((((......(((((.((((....((((((......))).)))..)))).)))))..((((..((((((((...))))))))))))..))))))))))............... ( -32.40) >DroYak_CAF1 10657 120 - 1 ACUAUUUAUAUGCAUUAUUUCGGCUGAAAAGGAAGUACCAAAUUACAUUUAAUUAGGCGAAACAGCGAAAUUCGCGUACCGUACGCGAAUCGCAGAUAUAAAUGGAGUGGGAUCAGGAGC .((((((((((......(((((.((((....((((((......))).)))..)))).)))))..((((..((((((((...))))))))))))..))))))))))............... ( -32.40) >consensus ACUAUUUAUAUGCAUUAUUUCGGCUGAAAAGGAAGUACCAAAUUACAUUUAAUUAGGCGAAACAGCGAAAUUCGCGUACCGUACGCGAAUCGCAGAUAUAAAUGGAGUGGGAUCAGGAGC .((((((((((......(((((.((((....((((((......))).)))..)))).)))))..((((..((((((((...))))))))))))..))))))))))............... (-32.40 = -32.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:51 2006