Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,098,319 – 4,098,439 |
Length | 120 |
Max. P | 0.976349 |
Location | 4,098,319 – 4,098,439 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -31.68 |
Energy contribution | -31.32 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.67 |
Structure conservation index | 0.90 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976349 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4098319 120 + 27905053 GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAAUAUGUAUAC ....(((((((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -35.20) >DroSec_CAF1 10228 120 + 1 GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAUAUUGAAUAC ....(((((((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -35.20) >DroSim_CAF1 10274 120 + 1 GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAUAUUGAAUAG ....(((((((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -35.20) >DroEre_CAF1 10298 120 + 1 GCACGCGUGUCAUCCUGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGAGGCUAGUGCACGGUAAAAAAAUAUGAACAC ((((..((.(((...((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..)).))).))..))))..................... ( -34.80) >DroYak_CAF1 10259 120 + 1 GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGUUGAUCGCUGUGGCUAGUGCACGGUAAAAAAAUAUGAACAC ((((....(((((..((..((((((((..(....)..((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... ( -36.10) >consensus GCACGCGUGUCAUCCCGGGCAGCAAUCAAAGUGAUAUGAAAAUUGCAUUUGGGUUCAACAGGUUCGCAGUUUUCGAUUGCUGAUCGCUGUGGCCAAUGCACCUUAAAAAAAUAUGAAUAC ....(((((((((..((..((((((((..(......)((((((((((((((.......)))))..)))))))))))))))))..))..)))))..))))..................... (-31.68 = -31.32 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:49 2006