Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 744,774 – 744,874 |
Length | 100 |
Max. P | 0.783421 |
Location | 744,774 – 744,874 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -33.58 |
Consensus MFE | -24.65 |
Energy contribution | -26.28 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.73 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 744774 100 + 27905053 CAGGCACUUUAGGCUGGUUAAUGGAUUCUGCCAUAGUUGACGCUGUUUGCUCAUUCUGCCGGUGUUUCUUGCGCCACUUCCUGGCUCCAUUAGCCCGGCC ...........((((((((((((((....(((((((.(((.((.....)))))..)))..(((((.....)))))......)))))))))))).)))))) ( -35.30) >DroSec_CAF1 1185 95 + 1 CAGGCACUUUAGGCUGGUUAAUGGGUUCGGCCGUAGUUGGCGCUGUUUGCUCAUUCUGCCGGUGUUUCUUGCACCACUUCCUGGCUCCAUUAGC-----C ..(((.(....))))(((((((((....((((((((.(((.((.....)))))..)))).(((((.....))))).......))))))))))))-----) ( -32.20) >DroSim_CAF1 1178 99 + 1 CAGGCACUUUAGGCUGGUUAAUGGGUUCGGCCGUAGU-GGCGCUGUUUGCUCAUUCUGCCGGUGUUUCUUGCACCACUUCCUGGCUCCAUUAGCCCGGCC ...........((((((((((((((..((((.(.(((-((.((.....)))))))).)))(((((.....))))).......)..)))))))).)))))) ( -38.10) >DroEre_CAF1 1006 94 + 1 CAGACACUUUGGGCUGGUUAAUGGAUUUG-----AGUUCUCGCUGUUUGCUCAUUCUGCCGGUGUUUU-UGCGCCACUUCCUGGCUCCACUAGCCCGGCC ........((((((((((....(((..((-----(((.(.....)...)))))....((((((((...-.))))).......)))))))))))))))).. ( -28.71) >consensus CAGGCACUUUAGGCUGGUUAAUGGAUUCGGCCGUAGUUGGCGCUGUUUGCUCAUUCUGCCGGUGUUUCUUGCACCACUUCCUGGCUCCAUUAGCCCGGCC ...........((((((((((((((....((((.(((....((.....))..........(((((.....))))))))...))))))))))))).))))) (-24.65 = -26.28 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:16 2006