Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,096,509 – 4,096,628 |
Length | 119 |
Max. P | 0.997567 |
Location | 4,096,509 – 4,096,628 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.45 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -20.65 |
Energy contribution | -20.25 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -1.96 |
Structure conservation index | 0.93 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4096509 119 + 27905053 AGAUCGCAUUGGCAUUGAUCUAUUUUCCUCAUAAAUAUGUAUUAAAUUAGAGGAUU-CCCUUUCAUAUUUAAUUUCUUUUGUGCCCAAAGGAAUAAUCAAUUCAAGCCCGCCUUCAAAAC .((..((...(((.((((......(((((((((((.....(((((((.(((((...-.)))))...)))))))....)))))).....)))))........))))))).))..))..... ( -24.04) >DroSec_CAF1 8475 118 + 1 AGAUCGCAUUGGCAUUGAUCUAUUUUCCUCAUAAAUAUGUAUUAAAUUAGAGGAUU-C-CUUUCAUAUUUAAUUUCUUUUGUACCCAAAGGAAUAAUCAAUUCAAGCCCGCCUUCAAAAC .((..((...(((.((((.............((((((((.........(((((...-)-))))))))))))..((((((((....))))))))........))))))).))..))..... ( -21.20) >DroSim_CAF1 8506 118 + 1 AGAUCGUAUUGGCAUUGAUCUAUUUUCCUCAUAAAUAUGUAUUAAAUUAGAGGAUU-C-CUUUCAUAUUUAAUUUCUUUUGUACCCAAAGGAAUAAUCAAUUCAAGCCCGCCUUCAAAAC .((..((...(((.((((.............((((((((.........(((((...-)-))))))))))))..((((((((....))))))))........))))))).))..))..... ( -19.60) >DroEre_CAF1 8503 119 + 1 AGAUCGCAUUGGCAUUGAUCUAUUUUCCUCAUAAAUAUGUAUUAAAUUAGGGGAAAGG-AAUUCAUAUUUAAUUUCUUUUGUACGCAAAGGAAUAAUCAAUUCAAGCCCGCCUUCAAAUC .((..((...(((..(((....((((((((...................)))))))).-...)))........((((((((....))))))))............))).))..))..... ( -23.61) >DroYak_CAF1 8446 118 + 1 AGAUCGCAUUGGCAUUGAUCUAUUUUCCUCAUAAAUAUGUAUUAAAUUAGGGGAUU-C-CUUUCAUAUUUAAUUUCUUUUGUACGCAAAGGAAUAAUCAAUUCAAGCCCGCCUUCAAAUC .((..((...(((.((((.............((((((((.........((((....-)-))).))))))))..((((((((....))))))))........))))))).))..))..... ( -22.90) >consensus AGAUCGCAUUGGCAUUGAUCUAUUUUCCUCAUAAAUAUGUAUUAAAUUAGAGGAUU_C_CUUUCAUAUUUAAUUUCUUUUGUACCCAAAGGAAUAAUCAAUUCAAGCCCGCCUUCAAAAC .((..((...(((.((((.......(((((...................)))))...................((((((((....))))))))........))))))).))..))..... (-20.65 = -20.25 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:35 2006