Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,092,554 – 4,092,674 |
Length | 120 |
Max. P | 0.542103 |
Location | 4,092,554 – 4,092,674 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -34.14 |
Consensus MFE | -31.18 |
Energy contribution | -31.42 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.22 |
Structure conservation index | 0.91 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4092554 120 + 27905053 ACGACCAGGAUCGUACCUCUAUUCACGAAGCCAUGGAGCAGCAGUCUAUUUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA .......(((((((..........)))).....(((((((((((((.....((......((((..(((......)))..))))...((.....))..)).)))))))))).))).))).. ( -30.30) >DroSec_CAF1 4468 120 + 1 ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAGUCCAUUUCGAUUUCGAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA .......((((....((((.......))))...((((((((((((((...........(((((..(((......)))..)))))..((.....))...).)))))))))).))))))).. ( -38.50) >DroSim_CAF1 4514 120 + 1 ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAGUCCAUUUCGAUUUCGAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA .......((((....((((.......))))...((((((((((((((...........(((((..(((......)))..)))))..((.....))...).)))))))))).))))))).. ( -38.50) >DroEre_CAF1 4523 120 + 1 ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAACAGCAGUCCAUAUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA .......((((....((((.......))))...(((..(((((((((............((((..(((......)))..))))...((.....))...).))))))))...))))))).. ( -28.70) >DroYak_CAF1 4456 120 + 1 ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAAUCGAUUUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA .......((((....((((.......))))...((((((((((((((....(((.((..((((..(((......)))..))))..)).)))........))))))))))).))))))).. ( -34.70) >consensus ACGACCAGGAUCGUACCUCUAUUCACGAGGCCAUGGAGCAGCAGUCCAUUUCGAUUUCCAAGGCUGGUAUUGUCACCUCUCUUCAAGCUCGUUGCACCGUGAUUGCUGCUGCCAAUCCCA .......((((....((((.......))))...(((((((((((((.............((((..(((......)))..))))...((.....)).....)))))))))).))))))).. (-31.18 = -31.42 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:18 2006