Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,092,394 – 4,092,514 |
Length | 120 |
Max. P | 0.691430 |
Location | 4,092,394 – 4,092,514 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -42.73 |
Consensus MFE | -36.96 |
Energy contribution | -38.03 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.59 |
Structure conservation index | 0.87 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4092394 120 - 27905053 AGCCAGAACCAGAGCACCCGCUUCCAAUGUCCACUCCCGAGAUACUGGAUUGCGGCGCACAUAAGCCGUGAGACCCACGGCACUGGCUCCCUGCCCAGUCGUGAAAACCGCACGUGGCGC ((((((.......((..((((.((((.(((((......).)))).))))..)))).))......((((((.....)))))).))))))....(((....((((.......)))).))).. ( -45.40) >DroSec_CAF1 4308 120 - 1 AGCCAGAACCAGAGCACCCGCUUCCAAUGUCCACUCCCGGGAUACUGGAUUGCGGCGCACAUAAGCCGUGAGACCGACGGCACUGGCUCCCUGCCCAGUCGUGAAAACCGCACGUGGCGC ((((((.......((..((((.((((.(((((.......))))).))))..)))).))......(((((.......))))).))))))....(((....((((.......)))).))).. ( -45.40) >DroEre_CAF1 4363 120 - 1 AGCCAGCACCAGAGCACCCGCCUCCAAUGUCCACUCACGGGAUACUGGAUUUCGGCGCACAUAAGCCGUAAGACCCACUGCACUGGCUCCCUGUCCGGUAGUGAAAACUGCACGAGGCGC ((((((...(((..........((((.(((((.......))))).))))...((((........)))).........)))..))))))....((((((((((....))))).)).))).. ( -40.00) >DroYak_CAF1 4296 120 - 1 AGCCAGCACCAGAGCACCCGCCUCCAAUGUCCACUCCCGGGAUACUGGAUUUCGUCGCACAUAAGCCGUAAGACCAACGGCACUGGCUCCCUGCCCCGUAGUGAAAACUGCACGUGGCGC .(((((((((((.((...((..((((.(((((.......))))).))))...))..))......(((((.......))))).)))).....)))...(((((....)))))...)))).. ( -40.10) >consensus AGCCAGAACCAGAGCACCCGCCUCCAAUGUCCACUCCCGGGAUACUGGAUUGCGGCGCACAUAAGCCGUAAGACCCACGGCACUGGCUCCCUGCCCAGUAGUGAAAACCGCACGUGGCGC ((((((.......((.((....((((.(((((.......))))).))))....)).))......(((((.......))))).))))))....(((..(((((....)))))....))).. (-36.96 = -38.03 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:17 2006