Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,091,190 – 4,091,350 |
Length | 160 |
Max. P | 0.998694 |
Location | 4,091,190 – 4,091,310 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -42.90 |
Consensus MFE | -41.12 |
Energy contribution | -41.08 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.09 |
Mean z-score | -2.13 |
Structure conservation index | 0.96 |
SVM decision value | 3.19 |
SVM RNA-class probability | 0.998694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4091190 120 + 27905053 GUCCGAUGAUGAGGACGACGUUGGACCCCGGGCCAAGAGACGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUUGAAAACCUGGAGGAUACCAA ((((........))))....((((.((((((((((....((.(((((.(.....).)))))))))))..((((((...((((.....))))...))))))......)))).))...)))) ( -40.60) >DroSec_CAF1 3104 120 + 1 GUCCGAUGAUGAGGACGACGUGGGACCCCGGGCCAAGAGACGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAA ((((........))))....(((..((((((((((....((.(((((.(.....).)))))))))))..((((((...((((.....))))...))))))......)))).))...))). ( -44.40) >DroSim_CAF1 3143 120 + 1 GUCCGAUGAUGAGGACGACGUGGGACCCCGGGCCAAGAGACGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAA ((((........))))....(((..((((((((((....((.(((((.(.....).)))))))))))..((((((...((((.....))))...))))))......)))).))...))). ( -44.40) >DroEre_CAF1 3159 120 + 1 GUCCGAUGAUGAGGACGACGUGGGACCCCGGGCCAAAAGACGAGCUGGCGAGAAAGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAA ((((........))))....(((..(((((((((((......(((((.(......)))))).)))))..((((((...((((.....))))...))))))......)))).))...))). ( -42.10) >DroYak_CAF1 3092 120 + 1 GUCCGAUGAUGAGGACGACGUGGGACCCCGGGCCAAGAGACGAGCUGGUGAGAAGGCAGCUGUUGGUGAGGUAGAAGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAA ((((........))))....(((..(((((((.((...(((.(((((.(.....).))))))))..)).((((((...((((.....))))...)))))).....))))).))...))). ( -43.00) >consensus GUCCGAUGAUGAGGACGACGUGGGACCCCGGGCCAAGAGACGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAA ((((........))))....(((..((((((((((....((.(((((.(.....).)))))))))))..((((((...((((.....))))...))))))......)))).))...))). (-41.12 = -41.08 + -0.04)
Location | 4,091,230 – 4,091,350 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -36.96 |
Energy contribution | -36.72 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.09 |
Mean z-score | -1.63 |
Structure conservation index | 0.97 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4091230 120 + 27905053 CGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUUGAAAACCUGGAGGAUACCAAGGGACACUCAACUAAAGAGUGGGUCAGUAUGCUAGGACCA ..(((((.(.....).)))))..(((...((((((...((((.....))))...)))))).....(((((...((((...((..(((((.......)))))..)).)))).))))).))) ( -36.30) >DroSec_CAF1 3144 120 + 1 CGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAAGGGACACUCAACCAAAGAGUGGGUCAGUAUGCUAGGACCA ..(((((.(.....).)))))..(((...((((((...((((.....))))...)))))).....(((((...((((...((..(((((.......)))))..)).)))).))))).))) ( -38.70) >DroSim_CAF1 3183 120 + 1 CGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAAGGGACACUCAACCAAAGAGUGGGUCAGUAUGCUAGGACCA ..(((((.(.....).)))))..(((...((((((...((((.....))))...)))))).....(((((...((((...((..(((((.......)))))..)).)))).))))).))) ( -38.70) >DroEre_CAF1 3199 120 + 1 CGAGCUGGCGAGAAAGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAAGGGACACUCUACCAAAGAGUGGGUCAGUAUGCUAGGACCA ..(((((.(......))))))..(((...((((((...((((.....))))...)))))).....(((((...((((...((..((((((.....))))))..)).)))).))))).))) ( -37.80) >DroYak_CAF1 3132 120 + 1 CGAGCUGGUGAGAAGGCAGCUGUUGGUGAGGUAGAAGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAAGGGACACUCUACCAAAGAGUGGGUCAGUAUGCUGGGACCA ..(((((.(.....).)))))..((((..((((((...((((.....))))...)))))).....((..(...((((...((..((((((.....))))))..)).)))).)..)))))) ( -39.60) >consensus CGAGCUGGCGAGAAGGCAGCUGUUGGCGAGGUAGAGGACACCGAGAUGGUGGAGUCUAUCGAAAACCUGGAGGAUACCAAGGGACACUCAACCAAAGAGUGGGUCAGUAUGCUAGGACCA ..(((((.(.....).)))))..(((...((((((...((((.....))))...)))))).....(((((...((((...((..(((((.......)))))..)).)))).))))).))) (-36.96 = -36.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:16 2006