Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,079,404 – 4,079,604 |
Length | 200 |
Max. P | 0.951551 |
Location | 4,079,404 – 4,079,524 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -29.33 |
Consensus MFE | -26.54 |
Energy contribution | -26.43 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.70 |
Structure conservation index | 0.90 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4079404 120 - 27905053 AACUGCAACGGCUAAUUGCCGUUGAAAGUGUGUACAUUUUGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACCUGUCCCACGGGGCGUAUACUCACUAACGUAUUGGCUAUUAGCUGUCA .......(((((((((.((((......(.((((((...........((((((..(......)..))))))....((((....)))))))))).)((....))..)))).))))))))).. ( -33.90) >DroEre_CAF1 7932 120 - 1 AACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUUGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACUUGUCACACGGGGCGUAUACUCACUAACGAAUUGGCUAUUAGCUGUCA .(((((((.((((((((..(((((..((((((..(...........((((((..(......)..)))))).((((.....)))))..))))))...))))))))))))).)).))))).. ( -27.20) >DroYak_CAF1 4988 120 - 1 AACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUAGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACUUGUCACACGGGGCGUAUACUCACUAACGUAUUGGCUAUUAGCUGUCA .(((((((.(((((((...(((((..((((((..(...........((((((..(......)..)))))).((((.....)))))..))))))...))))).))))))).)).))))).. ( -26.90) >consensus AACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUUGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACUUGUCACACGGGGCGUAUACUCACUAACGUAUUGGCUAUUAGCUGUCA .(((((((.(((((((...(((((..((((((..(...........((((((..(......)..)))))).((((.....)))))..))))))...))))).))))))).)).))))).. (-26.54 = -26.43 + -0.11)
Location | 4,079,444 – 4,079,564 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -22.14 |
Energy contribution | -23.70 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.83 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4079444 120 + 27905053 UGGGACAGGUAAACAUAAAAUAUUAUAAAUGUUUUCUGGCAAAAUGUACACACUUUCAACGGCAAUUAGCCGUUGCAGUUAAAUGUUUUUCUUAGCCAAACCUUUGGGAAUGGCUAAAAU .....((((.((((((............))))))))))(.(((((((....(((..(((((((.....))))))).)))...))))))).)(((((((..((....))..)))))))... ( -29.60) >DroEre_CAF1 7972 120 + 1 UGUGACAAGUAAACAUAAAAUAUUAUAAAUGUUUUCUGGCAAAAUGUACAUACUUUCAACGGCAAUUAGCCUUUGCCGUUGAAUGUUUUUCUUAGCCAAACCUUUGGGCCUCGGAAAGAU (((((((......((.(((((((.....))))))).))......))).))))..(((((((((((.......))))))))))).((((((((..(((.........)))...)))))))) ( -30.50) >DroYak_CAF1 5028 120 + 1 UGUGACAAGUAAACAUAAAAUAUUAUAAAUGUUUUCUGGCUAAAUGUACAUACUUUCAACGGCAAUUAGCCUUUGCCGUUGAAUGUUUUUCUUAGCCAAACCAUUGGGCCUCGGAAAGAU (((((((..((..((.(((((((.....))))))).))..))..))).))))..(((((((((((.......))))))))))).((((((((..(((.........)))...)))))))) ( -32.60) >consensus UGUGACAAGUAAACAUAAAAUAUUAUAAAUGUUUUCUGGCAAAAUGUACAUACUUUCAACGGCAAUUAGCCUUUGCCGUUGAAUGUUUUUCUUAGCCAAACCUUUGGGCCUCGGAAAGAU (((((((......((.(((((((.....))))))).))......))).))))..(((((((((((.......))))))))))).((((((((.((((((....))))..)).)))))))) (-22.14 = -23.70 + 1.56)
Location | 4,079,444 – 4,079,564 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -22.27 |
Energy contribution | -22.50 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -3.28 |
Structure conservation index | 0.71 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4079444 120 - 27905053 AUUUUAGCCAUUCCCAAAGGUUUGGCUAAGAAAAACAUUUAACUGCAACGGCUAAUUGCCGUUGAAAGUGUGUACAUUUUGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACCUGUCCCA .(((((((((..((....))..)))))))))...........((((((((((.....)))))))((((((....))))))..))).((((((..(......)..)))))).......... ( -33.30) >DroEre_CAF1 7972 120 - 1 AUCUUUCCGAGGCCCAAAGGUUUGGCUAAGAAAAACAUUCAACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUUGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACUUGUCACA .......((((.........((((((.((((...((((((((((((((.......))))))))))....))))...))))))))))((((((..(......)..)))))).))))..... ( -29.00) >DroYak_CAF1 5028 120 - 1 AUCUUUCCGAGGCCCAAUGGUUUGGCUAAGAAAAACAUUCAACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUAGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACUUGUCACA .......((((....((((.((((((((((....((((((((((((((.......))))))))))....))))...))))))))))...))))(((((....)))))....))))..... ( -32.20) >consensus AUCUUUCCGAGGCCCAAAGGUUUGGCUAAGAAAAACAUUCAACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUUGCCAGAAAACAUUUAUAAUAUUUUAUGUUUACUUGUCACA ....................((((((.((((...((((((((((((((.......))))))))))....))))...))))))))))((((((..(......)..)))))).......... (-22.27 = -22.50 + 0.23)
Location | 4,079,484 – 4,079,604 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -36.03 |
Consensus MFE | -29.40 |
Energy contribution | -30.07 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.84 |
Structure conservation index | 0.82 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4079484 120 + 27905053 AAAAUGUACACACUUUCAACGGCAAUUAGCCGUUGCAGUUAAAUGUUUUUCUUAGCCAAACCUUUGGGAAUGGCUAAAAUGCAUUGUUGCAAAUGCCACAGGGGCUAAAAGUACUAAAAA .....((((..(((..(((((((.....))))))).)))............((((((...((....))..((((.....((((....))))...))))....))))))..))))...... ( -34.10) >DroEre_CAF1 8012 120 + 1 AAAAUGUACAUACUUUCAACGGCAAUUAGCCUUUGCCGUUGAAUGUUUUUCUUAGCCAAACCUUUGGGCCUCGGAAAGAUGCAUUGUUGCAACUGCAAAAGUGGCUAAAAGUACUAAAAA .....((((..((.(((((((((((.......))))))))))).)).....(((((((.........((.((.....)).))....((((....))))...)))))))..))))...... ( -36.40) >DroYak_CAF1 5068 120 + 1 UAAAUGUACAUACUUUCAACGGCAAUUAGCCUUUGCCGUUGAAUGUUUUUCUUAGCCAAACCAUUGGGCCUCGGAAAGAUGCAUUGUUGCAACUGCAAAAGGGGCUAAAAGUACUAAAAA .....((((..((.(((((((((((.......))))))))))).)).....((((((...((....))(((.....((.((((....)))).)).....)))))))))..))))...... ( -37.60) >consensus AAAAUGUACAUACUUUCAACGGCAAUUAGCCUUUGCCGUUGAAUGUUUUUCUUAGCCAAACCUUUGGGCCUCGGAAAGAUGCAUUGUUGCAACUGCAAAAGGGGCUAAAAGUACUAAAAA .....((((..((.(((((((((((.......))))))))))).)).....((((((...((....))...........((((....))))...........))))))..))))...... (-29.40 = -30.07 + 0.67)
Location | 4,079,484 – 4,079,604 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -37.83 |
Consensus MFE | -32.01 |
Energy contribution | -31.57 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -4.21 |
Structure conservation index | 0.85 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4079484 120 - 27905053 UUUUUAGUACUUUUAGCCCCUGUGGCAUUUGCAACAAUGCAUUUUAGCCAUUCCCAAAGGUUUGGCUAAGAAAAACAUUUAACUGCAACGGCUAAUUGCCGUUGAAAGUGUGUACAUUUU ......((((.....(((.....)))...((((....))))(((((((((..((....))..)))))))))...((((((.....(((((((.....))))))).))))))))))..... ( -38.90) >DroEre_CAF1 8012 120 - 1 UUUUUAGUACUUUUAGCCACUUUUGCAGUUGCAACAAUGCAUCUUUCCGAGGCCCAAAGGUUUGGCUAAGAAAAACAUUCAACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUU ......((((((((((((((((....((.((((....)))).))....)))(((....))).)))))))))...((.(((((((((((.......))))))))))).))..))))..... ( -37.90) >DroYak_CAF1 5068 120 - 1 UUUUUAGUACUUUUAGCCCCUUUUGCAGUUGCAACAAUGCAUCUUUCCGAGGCCCAAUGGUUUGGCUAAGAAAAACAUUCAACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUA ......((((((((((((((((....((.((((....)))).))....))))((....))...))))))))...((.(((((((((((.......))))))))))).))..))))..... ( -36.70) >consensus UUUUUAGUACUUUUAGCCCCUUUUGCAGUUGCAACAAUGCAUCUUUCCGAGGCCCAAAGGUUUGGCUAAGAAAAACAUUCAACGGCAAAGGCUAAUUGCCGUUGAAAGUAUGUACAUUUU ......((((((((((((...((((....((((....))))......))))(((....)))..))))))))...((.(((((((((((.......))))))))))).))..))))..... (-32.01 = -31.57 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:09 2006