Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,078,041 – 4,078,240 |
Length | 199 |
Max. P | 0.957113 |
Location | 4,078,041 – 4,078,161 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -31.57 |
Consensus MFE | -22.79 |
Energy contribution | -23.23 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.72 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4078041 120 + 27905053 UGUCGGAUAACAAUUAUUUAAUUCGGGUUGGCAGCAGGCUGAAAUUAAAAUAACUUAGGCGACGAACUUUUUUCGCUGCCGAGUUUGUGUCUUAAGUCUUUAGACUUAAGACAGCAGUUA .......((((.....((((((((((.(((....))).))).)))))))..(((((.((((.((((.....)))).)))))))))(((((((((((((....))))))))))).)))))) ( -36.20) >DroEre_CAF1 6593 116 + 1 UGUCGGAUAACAAUUAUUUAAUUCGGGUUGGCACCAGGCUGAAAUUCAAAC----GAGGCGACGAACUUUUCUCGAAUUCGAGUUCGUGUCUUAAGUCGUAAGACUCAAGACAGCAGUUA .......((((..........(((((.(((....))).)))))........----...((.((((((((...........))))))))(((((.((((....)))).))))).)).)))) ( -32.80) >DroYak_CAF1 3645 108 + 1 UGUCGGAUAACAAUUAUUUAAUUCGGGUUGGCAGCAGGCUGAAAUUCAAAUGACUGAGGCGACGAACUUUUCUUGAAUUCGAGUUUGUGUCUUAAGUCUUUAGACU------------UA .(((.................(((((.(((....))).)))))........(((((((((.((((((((...........))))))))))))).))))....))).------------.. ( -25.70) >consensus UGUCGGAUAACAAUUAUUUAAUUCGGGUUGGCAGCAGGCUGAAAUUCAAAU_ACUGAGGCGACGAACUUUUCUCGAAUUCGAGUUUGUGUCUUAAGUCUUUAGACU_AAGACAGCAGUUA .(((..(..((..........(((((.(((....))).)))))...........((((((.((((((((...........)))))))))))))).))..)..)))............... (-22.79 = -23.23 + 0.45)
Location | 4,078,081 – 4,078,201 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.22 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -15.45 |
Energy contribution | -17.57 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.33 |
Structure conservation index | 0.52 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4078081 120 + 27905053 GAAAUUAAAAUAACUUAGGCGACGAACUUUUUUCGCUGCCGAGUUUGUGUCUUAAGUCUUUAGACUUAAGACAGCAGUUAUACUUUAUGGGGCGUCUUAUGACACAUGGAUAUGCUGUAA ...........(((((.((((.((((.....)))).)))))))))..(((((((((((....)))))))))))(((((.(((.((((((....(((....))).)))))))))))))).. ( -37.80) >DroEre_CAF1 6633 97 + 1 GAAAUUCAAAC----GAGGCGACGAACUUUUCUCGAAUUCGAGUUCGUGUCUUAAGUCGUAAGACUCAAGACAGCAGUUAUAUUUUAUG-------------------GAUAUGCUGUAA .........((----(((....)........((((....)))).))))(((((.((((....)))).))))).(((((.(((((.....-------------------)))))))))).. ( -27.30) >DroYak_CAF1 3685 108 + 1 GAAAUUCAAAUGACUGAGGCGACGAACUUUUCUUGAAUUCGAGUUUGUGUCUUAAGUCUUUAGACU------------UAUAUUUUAUGGGGAGUCUUAUGACACCUGGAUAUGCUGUAA ...........(((((((((.((((((((...........))))))))))))).)))).....((.------------(((((((...(((..(((....))).))))))))))..)).. ( -24.10) >consensus GAAAUUCAAAU_ACUGAGGCGACGAACUUUUCUCGAAUUCGAGUUUGUGUCUUAAGUCUUUAGACU_AAGACAGCAGUUAUAUUUUAUGGGG_GUCUUAUGACAC_UGGAUAUGCUGUAA .................((((((((((((...........))))))))(((((.((((....)))).)))))........................................)))).... (-15.45 = -17.57 + 2.11)
Location | 4,078,081 – 4,078,201 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.22 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -11.24 |
Energy contribution | -13.80 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.58 |
Structure conservation index | 0.46 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4078081 120 - 27905053 UUACAGCAUAUCCAUGUGUCAUAAGACGCCCCAUAAAGUAUAACUGCUGUCUUAAGUCUAAAGACUUAAGACACAAACUCGGCAGCGAAAAAAGUUCGUCGCCUAAGUUAUUUUAAUUUC ...............(((((....)))))....(((((((....((.(((((((((((....))))))))))))).....(((.(((((.....))))).))).....)))))))..... ( -33.50) >DroEre_CAF1 6633 97 - 1 UUACAGCAUAUC-------------------CAUAAAAUAUAACUGCUGUCUUGAGUCUUACGACUUAAGACACGAACUCGAAUUCGAGAAAAGUUCGUCGCCUC----GUUUGAAUUUC .....((.....-------------------.................((((((((((....))))))))))(((((((((....))).....)))))).))...----........... ( -22.70) >DroYak_CAF1 3685 108 - 1 UUACAGCAUAUCCAGGUGUCAUAAGACUCCCCAUAAAAUAUA------------AGUCUAAAGACUUAAGACACAAACUCGAAUUCAAGAAAAGUUCGUCGCCUCAGUCAUUUGAAUUUC .....((........(((((....(......)........((------------((((....)))))).))))).....((((((.......))))))..)).((((....))))..... ( -17.00) >consensus UUACAGCAUAUCCA_GUGUCAUAAGAC_CCCCAUAAAAUAUAACUGCUGUCUU_AGUCUAAAGACUUAAGACACAAACUCGAAUUCGAGAAAAGUUCGUCGCCUCAGU_AUUUGAAUUUC .....((.........................................((((((((((....)))))))))).....((((....))))...........)).................. (-11.24 = -13.80 + 2.56)
Location | 4,078,121 – 4,078,240 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.06 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -12.44 |
Energy contribution | -13.11 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.11 |
Mean z-score | -2.55 |
Structure conservation index | 0.49 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4078121 119 - 27905053 GAGAAUCUCC-ACAACCAGUUAUGUGUCUGCAGUCUAGUAUUACAGCAUAUCCAUGUGUCAUAAGACGCCCCAUAAAGUAUAACUGCUGUCUUAAGUCUAAAGACUUAAGACACAAACUC (((.......-.....((((((((((.(((.(((.....))).))))))......(((((....)))))..........))))))).(((((((((((....)))))))))))....))) ( -30.70) >DroEre_CAF1 6669 101 - 1 AAGAACCACUGGUAACCUGUUUUGUAUCUGCAGCCUAGUAUUACAGCAUAUC-------------------CAUAAAAUAUAACUGCUGUCUUGAGUCUUACGACUUAAGACACGAACUC .......(((((....((((.........)))).))))).....((((....-------------------.............))))((((((((((....))))))))))........ ( -21.13) >DroYak_CAF1 3725 108 - 1 AAGAAUCUUCGGCAACCAGUUUUGUGUCUGCAGUCUAGUAUUACAGCAUAUCCAGGUGUCAUAAGACUCCCCAUAAAAUAUA------------AGUCUAAAGACUUAAGACACAAACUC ..........(....).(((((.((((((..(((((..(((.(((.(.......).))).))))))))............((------------((((....))))))))))))))))). ( -23.70) >consensus AAGAAUCUCCGGCAACCAGUUUUGUGUCUGCAGUCUAGUAUUACAGCAUAUCCA_GUGUCAUAAGAC_CCCCAUAAAAUAUAACUGCUGUCUU_AGUCUAAAGACUUAAGACACAAACUC ..................(((.(((((((((..............)).............................................((((((....)))))))))))))))).. (-12.44 = -13.11 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:04 2006