Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,076,308 – 4,076,428 |
Length | 120 |
Max. P | 0.899289 |
Location | 4,076,308 – 4,076,428 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -29.17 |
Consensus MFE | -26.22 |
Energy contribution | -27.67 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.10 |
Mean z-score | -2.19 |
Structure conservation index | 0.90 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4076308 120 + 27905053 GCUAGUUUUGCUUUAGCAACACAGUCCAAAUAUUUUGUGUAGCCAAGGCAAUAUUAUCAGACCCGUCUCCAUCUAUUGGGCUGUGGUAAAAAUUACAAAAUUAAAUCAGGAGGCUAAUUC (.((((.(((((((.((.((((((..........)))))).)).))))))).)))).)......((((((.....((((..((((((....))))))...))))....))))))...... ( -29.00) >DroEre_CAF1 4730 116 + 1 ----GUUUCGCUUUGGCAACUCAGUCGAAAUAUUUUGUGUAGCCAAGGCAAUAUAAUCAGACCCGUCUCAAUCUAUUGGGCUGUGUUAAAAAUUACAAAAUUAAAUCAAGAGGCUAAUUC ----(((((((((((((.((.(((..........))).)).))))))))....(((((((.((((...........))))))).)))).....................)))))...... ( -29.20) >DroYak_CAF1 1880 116 + 1 ----GCUUUGCUUUGGCAACACAGUCUAAAUAUUUUGUAUAGCCAAGGCGAUACUAUCAGACCCGUCUCAAUCUAAUGGGCUGUGGUUGAAAUUACAAAAUUAAAUCAAGAGGCUAAUUC ----(((((((((((((...((((..........))))...))))))))...((((.(((.(((((.........))))))))))))......................)))))...... ( -29.30) >consensus ____GUUUUGCUUUGGCAACACAGUCCAAAUAUUUUGUGUAGCCAAGGCAAUAUUAUCAGACCCGUCUCAAUCUAUUGGGCUGUGGUAAAAAUUACAAAAUUAAAUCAAGAGGCUAAUUC ....(((((((((((((.((((((..........)))))).))))))))..(((((.(((.((((...........)))))))))))).....................)))))...... (-26.22 = -27.67 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:58 2006