Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,070,761 – 4,070,881 |
Length | 120 |
Max. P | 0.730549 |
Location | 4,070,761 – 4,070,881 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -39.38 |
Consensus MFE | -34.14 |
Energy contribution | -34.82 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.14 |
Mean z-score | -1.60 |
Structure conservation index | 0.87 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4070761 120 - 27905053 UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAGAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCACUGGUGGAGCCCUGCCU (((((......)))))...........((((((.(....((.(((((((((((....)))))))))))..))...(((......))).........((((((...))))))).)))))). ( -38.60) >DroSec_CAF1 7704 120 - 1 UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAUAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCACUGGUGGAGGCUUGUCU .....((.((((((......((.(((((.(((((....(..((((((((((((....)))))))))))).)....))))).)).))).))......((((((...)))))))))))).)) ( -43.30) >DroSim_CAF1 8242 120 - 1 UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAUAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCUCUGGUGGAGCCUUGCCU .....((.((((.(......((.(((((.(((((....(..((((((((((((....)))))))))))).)....))))).)).))).))......((((((...))))))).)))))). ( -40.70) >DroYak_CAF1 7387 120 - 1 UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAAAUCGUCUGCGUUUUUCUUGGAUUCGUCCAAGGAGAAGAGUACAGCCUGACGGGGACCAAUUACUCUCACAACUGGGGGAGCCCUGCCU (((((......)))))...........((((...((((.((.(((((((((((....)))))))))))(....).))..))))(((........((((((....))))))..))))))). ( -34.90) >consensus UUGACGGUCAAGUCGAAAAAUGAGUCCGGCAGGUCAUUCGCAUUUUUCUUGGAUUCGUCCAAGGAAAAGAGUACAGCCUGGCGUGGCCCAAUUAUUUUCACCACUGGUGGAGCCCUGCCU (((((......)))))...........((((((.(.(((((......((((((....))))))(((((((((...(((......)))...))))))))).......)))))).)))))). (-34.14 = -34.82 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:56 2006