Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,064,423 – 4,064,531 |
Length | 108 |
Max. P | 0.872941 |
Location | 4,064,423 – 4,064,531 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.21 |
Mean single sequence MFE | -43.02 |
Consensus MFE | -26.26 |
Energy contribution | -27.23 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.22 |
Mean z-score | -1.92 |
Structure conservation index | 0.61 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4064423 108 + 27905053 GCACCCCUGUUGCGGAGCCUUAAACUUACGGUCUUGCCAUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCGUGCUGCUCGAAAUGUGUGCAUUCCGCG ...........((((((((..........)))..((((((((((....)))).....((((((..((((((....))))))..)))))).....))).))).))))). ( -45.40) >DroSec_CAF1 1237 108 + 1 GCACCCCUGUUGCGGAGCCUUACACUUACGGUCUUGCCGUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCAUGCUGCUCGAAGUGUGUGCAUUCCGCG ...........(((((((..(((((((((((.....))))((((....)))).....(((((((..(((((....)))))..))))))).))))))).))..))))). ( -47.70) >DroSim_CAF1 1243 108 + 1 GCACCCCUGUUGCGGAGCCUUACACUUACGGUCUUGCCGUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCGUGCUGCUCGAAGUGUGUGCAUUCGGCG (((((.((..(((((..((......((((((.....))))))......))..)))))((((((..((((((....))))))..))))))..)).).))))........ ( -49.30) >DroYak_CAF1 1231 108 + 1 GCACCCCUGUUACGGAGCCUUACACUUACGGUCUUCCCGUGGCCAUAAGGUCCUGCAGAGCGGUGCGUCGCUGUUGCGGCAUGCUGCUCAAAGUGGGUGCAUUCCGCA ((((((((....(((..(((((...((((((.....))))))...)))))..)))..(((((((..(((((....)))))..)))))))..)).))))))........ ( -50.10) >DroMoj_CAF1 1130 91 + 1 -----------------UGCCACACUUACGGUCUUUCCAUGGCCAUAUGGUCCCGUGGAGCGGUGCGUCGCCAUUGCUGCAUGCUGCUCAAAGUGCCGGCAAUCGUCG -----------------((((.(((((((((.....(((((....)))))..)))).(((((((..((.((....)).))..))))))).)))))..))))....... ( -33.50) >DroAna_CAF1 1176 108 + 1 UUAUCCUCGAAGUGGUAUCCCACACUUACAGUCUUUCCAUGUCCAUAUGGCCCUGUGGAGCGAUGAGUGGCCAUCGCUGCGUGCUGCUCGAAGUGAACGCACUCAUCA .....(((...((((....))))...(((((.....(((((....)))))..)))))))).((((((((.(..(((((.((.......)).)))))..))))))))). ( -32.10) >consensus GCACCCCUGUUGCGGAGCCUUACACUUACGGUCUUGCCAUGGCCAUAUGGUCCUGUAGAGCGGUGCGUCGCUGUUGCGGCAUGCUGCUCGAAGUGUGUGCAUUCCGCG ((((.((......)).......(((((((((.....(((((....)))))..)))).(((((((..(((((....)))))..))))))).))))).))))........ (-26.26 = -27.23 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:55 2006