Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,056,891 – 4,056,988 |
Length | 97 |
Max. P | 0.576450 |
Location | 4,056,891 – 4,056,988 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.86 |
Mean single sequence MFE | -19.95 |
Consensus MFE | -12.46 |
Energy contribution | -13.65 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.76 |
Structure conservation index | 0.62 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4056891 97 - 27905053 AAGAAAAAUAUAUAUGUAUGUAUAUCGGACAGACCUUGU-UGUCCACUCCUCCUAACUCCAUCCACCUCCUUCCUCCUGGCAGAUCCCUG--------------CCUCGUCC ..(((..(((((((....))))))).((((((......)-))))).........................))).....(((((....)))--------------))...... ( -17.40) >DroSec_CAF1 60774 97 - 1 AAGGAAAAUAUAUACGUAUGUAUAUCGGACAGAGCUUGU-UGUCCACUCCUCCUAACUCCUUCCAUCUCCUGCCUCCUGGCAGAUCCCUG--------------CCUCGUCC ..((((...((((((....)))))).((((((......)-)))))...............)))).....(((((....))))).......--------------........ ( -22.80) >DroSim_CAF1 60545 98 - 1 AAGGAAAAUAUAUACGUAUGUAUAUCGGGCAGACCUUGUUUGUCCACUCCUCCCAACUCCUUCCAGCUCCUGCCUCCUGGCAGAUCCCUG--------------CCUCGUCC (((((....((((((....)))))).((((((((...))))))))............))))).(((...(((((....)))))....)))--------------........ ( -25.70) >DroEre_CAF1 46765 98 - 1 CAGGAAAAUA----------UAUAUCGGGCAGACCUUGU-UGUCCACUCCUCCUAACUCCUUCCAC---CGUCCUCCUGGCAGAUCCCUCGUCCGCGUCCUCGUCCUCGUCC (((((.....----------......((((((......)-)))))..........((.........---.))..)))))((.(((.....))).))................ ( -13.90) >consensus AAGGAAAAUAUAUACGUAUGUAUAUCGGACAGACCUUGU_UGUCCACUCCUCCUAACUCCUUCCACCUCCUGCCUCCUGGCAGAUCCCUG______________CCUCGUCC ..((((.((((((....))))))...(((((.(.....).)))))...............)))).....(((((....)))))............................. (-12.46 = -13.65 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:52 2006