Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,052,555 – 4,052,659 |
Length | 104 |
Max. P | 0.709678 |
Location | 4,052,555 – 4,052,659 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -18.38 |
Energy contribution | -17.78 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.30 |
Mean z-score | -1.73 |
Structure conservation index | 0.67 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4052555 104 - 27905053 CCACUGCAUUGUUAUCUGCUAGCCUGUUCAUUAGCAGAGGGUAUCAUUAAAAAGUAGAGAAGAAAAUCUCAGCAUUUUCGGAGUAUUUUUCCAAUGCAG-CUA----------UC ...((((((((...((((((((........))))))))((((((..(.((((.((.((((......)))).)).)))).)..))))))...))))))))-...----------.. ( -27.10) >DroSec_CAF1 56455 104 - 1 CCACUGCAUUGUUAUCUGCUAGCCUGUUCAUUAGCAGAGGGUAUCAUUAAAAAAUUGAGAGGAAAAUCUCAGCAUUUUCGGAGUAUUUUUCCAACGCAG-CUA----------UC ...((((..((((.((((((((........))))))))..................((((......)))))))).....((((.....))))...))))-...----------.. ( -24.50) >DroSim_CAF1 55739 104 - 1 CCACUGCAUUGUUAUCUGCUAGCCUGUUCAUUAGCAGGGGGUAUCAUUAAAAAAUAGAGAGGAAAAUCUUAGCGUUUUCGAAGUAUUUUUCCAACGCAG-CUA----------UU ...((((.........((((..(((((......))))).)))).................((((((......((....))......))))))...))))-...----------.. ( -22.30) >DroEre_CAF1 42388 105 - 1 CCACUGCAUUGUUAUCUGCUCGCCUGUUCAUUA-----GGGCAUCAU-AAAAAAUGGGG----AAUACUCGGCAUUUUCGGAGUAUUUCUCCAACGCAGGCUAUCGCUGACUGUG .(((..((.((.(((((((..((((........-----)))).....-......(((((----(((((((.(......).))))))))).)))..))))).)).)).))...))) ( -30.60) >DroYak_CAF1 59405 102 - 1 CCGCUGCAUUGUUAUCUGCUAGCCUGUUCAUUA-----GGGCAUCAU-AAAAAGCGGAG----AAAACUCGGCAUUUUCGGAGUAUUUCUCCAGCGCAGA-UAU--CCAGAUAUC ...(((......(((((((..((((........-----)))).....-.....((((((----(((((((.(......).)))).))))))).)))))))-)).--.)))..... ( -32.60) >consensus CCACUGCAUUGUUAUCUGCUAGCCUGUUCAUUAGCAG_GGGUAUCAUUAAAAAAUAGAGA_GAAAAUCUCAGCAUUUUCGGAGUAUUUUUCCAACGCAG_CUA__________UC ...((((.........((((.((((.............))))..............((((......)))))))).....((((.....))))...))))................ (-18.38 = -17.78 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:47 2006