Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,049,119 – 4,049,227 |
Length | 108 |
Max. P | 0.681721 |
Location | 4,049,119 – 4,049,227 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -32.87 |
Consensus MFE | -21.68 |
Energy contribution | -22.35 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.25 |
Mean z-score | -1.39 |
Structure conservation index | 0.66 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4049119 108 + 27905053 AAAUCGCUUGGCAAUUAAAUAACUUCACACCGCGCGCUAAGUGGGCGUGGC--AGCAAACGCCCACACACGCCCAAAAAUUUCGCAUUUG-AAAUGUAAAGCGCACGCGGC .............................(((((.((...((((((((...--.....))))))))....((......((((((....))-)))).....)))).))))). ( -33.70) >DroPse_CAF1 33978 109 + 1 AAAACGCUUGGCAAUUAAAUAACUUCACACCGCGCGCUGAAUGGGCGUGUCGCUGUGGACGCCCACCCCCGCCCCAGGAU-UCGCAUUUG-AAAUGUGAAGCGCACGCGGC ....(((...((...........((((((.((((((((.....)))))).)).)))))).((......((......)).(-((((((...-..)))))))))))..))).. ( -32.90) >DroEre_CAF1 38977 108 + 1 AAAUCGCUUGGCAAUUAAAUAACUUCACACCGCGCGCUAAGUGGGCGUGGC--CGCCGACGCCCACACACGCCCAGAAAUUUCGCAUUUG-AAAUGUAAAGUGCACGCGGC .............................(((((((....((((((((.(.--...).))))))))...)))...........((((((.-.......))))))..)))). ( -32.80) >DroWil_CAF1 63278 97 + 1 UAAACGCUUAGCAAUUAAAUAACUUCACACUGUGCUCGAAAUGGGCGUGAA----------CCCGC-CACGCCCCUUCA---UGCAUUUGCGAAUGUGAAGCGCACGCGGC ....(((((.(((..........(((.((..((((..(((..(((((((..----------.....-))))))).))).---.)))).)).)))))).)))))........ ( -28.40) >DroAna_CAF1 39584 108 + 1 AAAACGCUUGGCAAUUAAAUAAAUUCACACCGCAAGCUGUGUGGGCGUGGC--CAGUUCCGCCCACCACCGCCCAAAAAUUUCGCAUUUG-AAAUGUAAAGCGCACGCGGC ....((((((((..............(((.(....).)))(((((((..(.--...)..)))))))....))).....((((((....))-))))...)))))........ ( -29.90) >DroPer_CAF1 34414 109 + 1 AAAACGCUUGGCAAUUAAAUAACUUCACACCGCGCGCUGAAUGGGCGUGUCGGUGUGGACGCCCACCCCCGCCCCAGGAU-UCGCAUUUG-AAAUGUGAAGCGCACGCGGC ....(((...((...........(((((((((((((((.....)))))).))))))))).((......((......)).(-((((((...-..)))))))))))..))).. ( -39.50) >consensus AAAACGCUUGGCAAUUAAAUAACUUCACACCGCGCGCUAAAUGGGCGUGGC__CGCGGACGCCCACCCACGCCCAAAAAU_UCGCAUUUG_AAAUGUAAAGCGCACGCGGC .............................(((((.((....(((((((.(......).)))))))..................(((((....))))).....)).))))). (-21.68 = -22.35 + 0.67)
Location | 4,049,119 – 4,049,227 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -39.40 |
Consensus MFE | -26.29 |
Energy contribution | -26.48 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.70 |
Structure conservation index | 0.67 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4049119 108 - 27905053 GCCGCGUGCGCUUUACAUUU-CAAAUGCGAAAUUUUUGGGCGUGUGUGGGCGUUUGCU--GCCACGCCCACUUAGCGCGCGGUGUGAAGUUAUUUAAUUGCCAAGCGAUUU (((((((((((((...((((-(......)))))....))))....((((((((.....--...))))))))...)))))))))............((((((...)))))). ( -41.60) >DroPse_CAF1 33978 109 - 1 GCCGCGUGCGCUUCACAUUU-CAAAUGCGA-AUCCUGGGGCGGGGGUGGGCGUCCACAGCGACACGCCCAUUCAGCGCGCGGUGUGAAGUUAUUUAAUUGCCAAGCGUUUU (((((((((((((((...((-(......))-)...))))))..((((((((((..........)))))))))).)))))))))............................ ( -42.50) >DroEre_CAF1 38977 108 - 1 GCCGCGUGCACUUUACAUUU-CAAAUGCGAAAUUUCUGGGCGUGUGUGGGCGUCGGCG--GCCACGCCCACUUAGCGCGCGGUGUGAAGUUAUUUAAUUGCCAAGCGAUUU (((((((((.......((((-(......)))))...((((((((.((.(.(...).).--))))))))))....)))))))))............((((((...)))))). ( -40.60) >DroWil_CAF1 63278 97 - 1 GCCGCGUGCGCUUCACAUUCGCAAAUGCA---UGAAGGGGCGUG-GCGGG----------UUCACGCCCAUUUCGAGCACAGUGUGAAGUUAUUUAAUUGCUAAGCGUUUA ..(((..((((((((((((.(....(((.---((((((((((((-(....----------.)))))))).))))).)))))))))))))).........))...))).... ( -35.60) >DroAna_CAF1 39584 108 - 1 GCCGCGUGCGCUUUACAUUU-CAAAUGCGAAAUUUUUGGGCGGUGGUGGGCGGAACUG--GCCACGCCCACACAGCUUGCGGUGUGAAUUUAUUUAAUUGCCAAGCGUUUU ((((((.((((((...((((-(......)))))....)))).(((.((((((......--....))))))))).)).))))))............................ ( -33.60) >DroPer_CAF1 34414 109 - 1 GCCGCGUGCGCUUCACAUUU-CAAAUGCGA-AUCCUGGGGCGGGGGUGGGCGUCCACACCGACACGCCCAUUCAGCGCGCGGUGUGAAGUUAUUUAAUUGCCAAGCGUUUU (((((((((((((((...((-(......))-)...))))))..((((((((((..........)))))))))).)))))))))............................ ( -42.50) >consensus GCCGCGUGCGCUUCACAUUU_CAAAUGCGA_AUUUUGGGGCGGGGGUGGGCGUCCACA__GCCACGCCCACUCAGCGCGCGGUGUGAAGUUAUUUAAUUGCCAAGCGUUUU ..(((((((((..............(((...........)))...(((((((............)))))))...))))))(((.((((....))))...)))..))).... (-26.29 = -26.48 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:46 2006