Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,048,497 – 4,048,604 |
Length | 107 |
Max. P | 0.991488 |
Location | 4,048,497 – 4,048,604 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -25.80 |
Energy contribution | -25.92 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -2.77 |
Structure conservation index | 0.76 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4048497 107 - 27905053 CGUUGGUGGGGGGGGGGGGGUGGCGUAGCAAGUCGGGGCUAUAAUGCCUGCAUAUAAACAA-AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC .........((.(...(.(...((((((....((...(((((((.((((((((((......-.....)))))))))))))))))..)).))))))...).)...).)) ( -34.70) >DroSec_CAF1 52537 94 - 1 UGGUGGGGGGCG---GG----------GCAAGUCGGGGCUAUAGUGCCUGCAUAUAAUCAA-AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC .((((....(((---..----------((.((((...(((((((.((((((((((......-.....)))))))))))))))))..)).))..))...)))...)))) ( -33.20) >DroSim_CAF1 51744 94 - 1 UGGUGGUGGGCG---GG----------GCAAGUCGGGGCUAUAAUGCCUGCAUAUAAACAA-AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC .((((((((((.---.(----------(....))...(((((((.((((((((((......-.....)))))))))))))))))...))))))((....))...)))) ( -35.10) >DroEre_CAF1 38367 91 - 1 ----GGGGGGCG---GG----------GCAAGUCGGGGCUACAAUGCCUGCAUAUAUACGAAUGUAUGUAUGUCGGUUGGUGGCAAGGUCUACGCAAAUGCAAACGCC ----....((((---((----------((........(((((...(((.((((((((((....)))))))))).)))..)))))...))))..((....))...)))) ( -33.40) >DroYak_CAF1 55256 89 - 1 ----GG--GGCG---GG----------GCAAGUCGAGGCUAUAAUGCCUGCAUAUAUGUAUAUAUAUAUAUGUCGACUUGUGGCAAGGUCUACGCAAAUGCAAACGCC ----..--((((---..----------((((((((((((......))))((((((((((....)))))))))))))))))).(((..((....))...)))...)))) ( -34.00) >consensus _G_UGGGGGGCG___GG__________GCAAGUCGGGGCUAUAAUGCCUGCAUAUAAACAA_AGUAAGUAUGUAGGCUUGUGGCAAGGUCUACGCAAAUGCAAACGCC ........((((..................((((...(((((((.((((((((((..((....))..)))))))))))))))))..)).))..((....))...)))) (-25.80 = -25.92 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:44 2006