Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,042,540 – 4,042,644 |
Length | 104 |
Max. P | 0.735587 |
Location | 4,042,540 – 4,042,644 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.87 |
Mean single sequence MFE | -20.90 |
Consensus MFE | -14.56 |
Energy contribution | -15.12 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -1.90 |
Structure conservation index | 0.70 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4042540 104 - 27905053 CCAAUCUCCUUUUGGUUUCCACCAUCAC----------UCCACUCCACUUACUCCUCCUUUCCCAUUCCCCAUUUUAGGUGACACGUUCUGGGAAAGUAAUACUGGCAAAGCUA (((.........((((....))))....----------...................((((((((.((.((......)).)).......))))))))......)))........ ( -14.50) >DroSec_CAF1 47261 113 - 1 CCAACCUCCUUUUGGCUUCCACCAUCACUUCUCUCCACUCCACUCCACUUACUCCUCUU-UUCCCUUCCCCAUUUCAGGUGACACGUUCUGGGGAAGUAAUACUGGGACAGGUA ...((((.....(((......)))............................((((...-.(..((((((((.....(....)......))))))))..)....)))).)))). ( -22.70) >DroYak_CAF1 49135 114 - 1 UCAACCUCCUGUUGGGUUCCACCAUCACUGCCCUCCACUCCACGCCUCUCACUCCUCCUUUCCCAUUCCCCAUUUCAGGUGACACGUUCUGGGGAAGUCAUAUGGGUACAGGUA .......(((((.((((............))))............................(((((((((((.....(....)......))))))......))))).))))).. ( -25.50) >consensus CCAACCUCCUUUUGGCUUCCACCAUCACU_C_CUCCACUCCACUCCACUUACUCCUCCUUUCCCAUUCCCCAUUUCAGGUGACACGUUCUGGGGAAGUAAUACUGGCACAGGUA .......((((((((......)))...................((((.(((((.((((........((.((......)).))........)))).)))))...))))))))).. (-14.56 = -15.12 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:43 2006